View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18562_low_6 (Length: 394)
Name: NF18562_low_6
Description: NF18562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18562_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 46736558 - 46736921
Alignment:
| Q |
1 |
ccggaaatgaaagatgtggtgacaatgttggaagaaattgatacaagcaaaggaggcggaatgataagagaagaccagactccattttgtttttgtttta |
100 |
Q |
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| T |
46736558 |
ccggaaatgaaagatgtggtgacaatgttggaaaaaattgatacaagcaaaggaggcggaatgataagagaagaccagactccattttgtttttgtttta |
46736657 |
T |
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| Q |
101 |
aacctgctcgtggcccataatagtcatactcaatttttaatgagtattattatgtacattaagtaagtcattgtcgtttatggaaatatcggagttgttg |
200 |
Q |
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| T |
46736658 |
aacctgctcgtggcccataataatcatactcaatttttaatgagtataattatgtacattaagtaagtcattgtcgtctatggaaatatcggagttgttg |
46736757 |
T |
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| Q |
201 |
tctatggaaatatcggaggtatgttgcagccttcaactgtcatttgttggcttgcttgtcaatttactagttgacttcatatatattctatattagatat |
300 |
Q |
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| T |
46736758 |
tctatggaaatatcggaggtatgttgcagccttcaactgtcatttgttggcttgcttgtcaatttactggttgacttcatatatattttatatt------ |
46736851 |
T |
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| Q |
301 |
tgaaaaagatattgaactagtattgtgttgcttgctggtattgtgagtcattgatttatgggatactcaatgtgtc |
376 |
Q |
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| T |
46736852 |
------agatattgaactagtattgtgttgcttgctggtattgtgagtcattgatttatgggatactcaatgtgtc |
46736921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 986198 - 986262
Alignment:
| Q |
1 |
ccggaaatgaaagatgtggtgacaatgttggaagaaattgatacaagcaaaggaggcggaatgat |
65 |
Q |
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| T |
986198 |
ccggaaatgaaggatgtggtgataatgctagaagcactggatacaagcaaaggtggtggaatgat |
986262 |
T |
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