View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18562_low_8 (Length: 313)

Name: NF18562_low_8
Description: NF18562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18562_low_8
NF18562_low_8
[»] chr7 (9 HSPs)
chr7 (7-296)||(35241066-35241357)
chr7 (194-296)||(1484027-1484129)
chr7 (194-296)||(33142853-33142955)
chr7 (194-296)||(37997092-37997194)
chr7 (194-296)||(2947453-2947555)
chr7 (194-296)||(47490820-47490922)
chr7 (194-296)||(6484492-6484594)
chr7 (236-291)||(29511806-29511861)
chr7 (232-294)||(36845105-36845167)
[»] chr5 (4 HSPs)
chr5 (7-296)||(16049745-16050042)
chr5 (194-296)||(35470887-35470989)
chr5 (208-296)||(41197009-41197097)
chr5 (232-294)||(42650840-42650902)
[»] chr3 (4 HSPs)
chr3 (14-164)||(30593963-30594112)
chr3 (186-294)||(30593823-30593931)
chr3 (194-294)||(50036292-50036389)
chr3 (236-296)||(53714569-53714629)
[»] chr8 (5 HSPs)
chr8 (68-162)||(32966268-32966362)
chr8 (194-296)||(37785014-37785116)
chr8 (195-296)||(35971220-35971321)
chr8 (217-296)||(2707561-2707640)
chr8 (193-269)||(7217642-7217718)
[»] chr6 (2 HSPs)
chr6 (194-296)||(26419978-26420080)
chr6 (194-296)||(14800449-14800551)
[»] chr2 (3 HSPs)
chr2 (194-296)||(23989257-23989359)
chr2 (208-296)||(29100974-29101062)
chr2 (233-294)||(6084954-6085015)
[»] chr1 (3 HSPs)
chr1 (194-296)||(49304638-49304740)
chr1 (208-296)||(16264632-16264720)
chr1 (233-296)||(45597706-45597769)
[»] scaffold0015 (1 HSPs)
scaffold0015 (194-296)||(35042-35144)
[»] chr4 (2 HSPs)
chr4 (194-296)||(6231008-6231110)
chr4 (194-296)||(56396471-56396573)


Alignment Details
Target: chr7 (Bit Score: 176; Significance: 8e-95; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 7 - 296
Target Start/End: Original strand, 35241066 - 35241357
Alignment:
Q  7 tagattattctccagggaagcattaaattagaaacggaagagtgtaaatttaaatcttgcagaaaatcattaacccattttcaatttagattaagtaact 106  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  35241066 tagattcttctccagggaagcattaaattagaaacggaagagtgtaaatttaaatcttgcggaaaatcattaacccattttcagtttagattaagtaact 35241165  T
Q  107 ccatagatgttagatgtccagaagaattacgaaggtgggagtaagaacaagagattga-nnnnnnnnnnnnnnnngacaa-agattgatgttgttgtttg 204  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||                  |||| |||||||||||||||||||    
T  35241166 ccatagatgttagatgtccaggagaattacgaaggtgagagtaagaacaagatattgatgtttttttttgacaaaaacaagagattgatgttgttgtttg 35241265  T
Q  205 tggtgggcgagcaagagacatggatggggaaagagaaagatgattgaacatattgtaaaaataatctaatgtttagagattatgataatact 296  Q
    ||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||| | ||||||||||||    
T  35241266 tggtgggcgagtaagagacatagatggggaaagagaaagatgatggaacatattgtaaaaataatttaatgtttagaaaatatgataatact 35241357  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 194 - 296
Target Start/End: Complemental strand, 1484129 - 1484027
Alignment:
Q  194 gttgttgtttgtggtgggcgagcaagagacatggatggggaaagagaaagatgattgaacatattgtaaaaataatctaatgtttagagattatgataat 293  Q
    |||||||||  || ||| |||| |||||| |||||  |||||||||||||||||| ||||||| |||||||||||||||||||||| ||| |||||||||    
T  1484129 gttgttgttgttgttggacgagtaagagatatggagagggaaagagaaagatgatggaacatagtgtaaaaataatctaatgtttaaagagtatgataat 1484030  T
Q  294 act 296  Q
    |||    
T  1484029 act 1484027  T

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Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 194 - 296
Target Start/End: Original strand, 33142853 - 33142955
Alignment:
Q  194 gttgttgtttgtggtgggcgagcaagagacatggatggggaaagagaaagatgattgaacatattgtaaaaataatctaatgtttagagattatgataat 293  Q
    |||||||||  || |||||||| |||||| |||||  |||||||||||||||||| ||||||| ||| |||||||||||||||||| ||| |||||||||    
T  33142853 gttgttgttgttgttgggcgagtaagagatatggagagggaaagagaaagatgatggaacatagtgtgaaaataatctaatgtttaaagagtatgataat 33142952  T
Q  294 act 296  Q
    |||    
T  33142953 act 33142955  T

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Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 194 - 296
Target Start/End: Complemental strand, 37997194 - 37997092
Alignment:
Q  194 gttgttgtttgtggtgggcgagcaagagacatggatggggaaagagaaagatgattgaacatattgtaaaaataatctaatgtttagagattatgataat 293  Q
    |||||||||  || |||||||| |||||| |||||  |||||||||||||||||| ||||||| ||| |||||||||||||||||| ||| |||||||||    
T  37997194 gttgttgttgttgttgggcgagtaagagatatggagagggaaagagaaagatgatggaacatagtgtgaaaataatctaatgtttaaagagtatgataat 37997095  T
Q  294 act 296  Q
    |||    
T  37997094 act 37997092  T

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Target: chr7; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 194 - 296
Target Start/End: Original strand, 2947453 - 2947555
Alignment:
Q  194 gttgttgtttgtggtgggcgagcaagagacatggatggggaaagagaaagatgattgaacatattgtaaaaataatctaatgtttagagattatgataat 293  Q
    |||||||||  || |||||||| |||||| |||||  |||||||||||||||||| ||||||| ||| |||||||||||||||||| ||| ||| |||||    
T  2947453 gttgttgttgttgttgggcgagtaagagatatggagagggaaagagaaagatgatggaacatagtgtgaaaataatctaatgtttaaagagtataataat 2947552  T
Q  294 act 296  Q
    |||    
T  2947553 act 2947555  T

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Target: chr7; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 194 - 296
Target Start/End: Complemental strand, 47490922 - 47490820
Alignment:
Q  194 gttgttgtttgtggtgggcgagcaagagacatggatggggaaagagaaagatgattgaacatattgtaaaaataatctaatgtttagagattatgataat 293  Q
    |||||||||  || |||||||| |||||| |||||  | |||||||||||||||| ||||||| ||| |||||||||||||||||| ||| |||||||||    
T  47490922 gttgttgttgttgttgggcgagtaagagatatggagagagaaagagaaagatgatggaacatagtgtgaaaataatctaatgtttaaagagtatgataat 47490823  T
Q  294 act 296  Q
    |||    
T  47490822 act 47490820  T

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Target: chr7; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 194 - 296
Target Start/End: Original strand, 6484492 - 6484594
Alignment:
Q  194 gttgttgtttgtggtgggcgagcaagagacatggatggggaaagagaaagatgattgaacatattgtaaaaataatctaatgtttagagattatgataat 293  Q
    |||||||||  || |||||||| |||| | |||||  |||||||||||| ||||| ||||||| ||| |||||||||||||||||| ||| |||||||||    
T  6484492 gttgttgttgttgttgggcgagtaagaaatatggagagggaaagagaaacatgatggaacatagtgtgaaaataatctaatgtttaaagagtatgataat 6484591  T
Q  294 act 296  Q
    |||    
T  6484592 act 6484594  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 236 - 291
Target Start/End: Original strand, 29511806 - 29511861
Alignment:
Q  236 agagaaagatgattgaacatattgtaaaaataatctaatgtttagagattatgata 291  Q
    ||||||||||||| ||| ||  |||||||||||||||||||| ||||| |||||||    
T  29511806 agagaaagatgatggaagatgatgtaaaaataatctaatgttgagagactatgata 29511861  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 294
Target Start/End: Original strand, 36845105 - 36845167
Alignment:
Q  232 ggaaagagaaagatgattgaacatattgtaaaaataatctaatgtttagagattatgataata 294  Q
    |||||||||| |||||| ||| ||| ||||||||||||||| |||| || || ||||||||||    
T  36845105 ggaaagagaaggatgatggaagataatgtaaaaataatctagtgttgagggactatgataata 36845167  T

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Target: chr5 (Bit Score: 152; Significance: 2e-80; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 7 - 296
Target Start/End: Complemental strand, 16050042 - 16049745
Alignment:
Q  7 tagattattctccagggaagcattaaattagaaacggaagagtgtaaatttaa----atcttgcagaaaatcattaacccattttcaatttagattaagt 102  Q
    |||||| ||||| |||||||||||||||||||| ||||||||| |||||||||    ||||||| |||||||||||||||||||||||||||||||||||    
T  16050042 tagattcttctctagggaagcattaaattagaagcggaagagtctaaatttaattaaatcttgcggaaaatcattaacccattttcaatttagattaagt 16049943  T
Q  103 aactccatagatgttagatgtccagaagaattacgaaggtgggagtaagaacaagagattgannnnnnnnnnnnnnnngacaa----agattgatgttgt 198  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||                 | ||    |||||||||||||    
T  16049942 aactccatagatgttagatgtgcaggagaattacgaaggtgggagtaagaacaagagattgatggtttttttttttacaaaaacaagagattgatgttgt 16049843  T
Q  199 tgtttgtggtgggcgagcaagagacatggatggggaaagagaaagatgattgaacatattgtaaaaataatctaatgtttagagattatgataatact 296  Q
    ||||||||||||||||| |||||||||||||||  |||||||||||||||  |||||||||||||||||||||||| |||||||| ||||||||||||    
T  16049842 tgtttgtggtgggcgagtaagagacatggatggaaaaagagaaagatgatgaaacatattgtaaaaataatctaatatttagagagtatgataatact 16049745  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 194 - 296
Target Start/End: Complemental strand, 35470989 - 35470887
Alignment:
Q  194 gttgttgtttgtggtgggcgagcaagagacatggatggggaaagagaaagatgattgaacatattgtaaaaataatctaatgtttagagattatgataat 293  Q
    |||||||||  || |||||||| |||||| |||||  |||||||||||||||||| ||||||| ||| |||||||||||||||||| ||| |||||||||    
T  35470989 gttgttgttgttgttgggcgagtaagagatatggagagggaaagagaaagatgatggaacatagtgtgaaaataatctaatgtttaaagagtatgataat 35470890  T
Q  294 act 296  Q
    |||    
T  35470889 act 35470887  T

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Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 208 - 296
Target Start/End: Original strand, 41197009 - 41197097
Alignment:
Q  208 tgggcgagcaagagacatggatggggaaagagaaagatgattgaacatattgtaaaaataatctaatgtttagagattatgataatact 296  Q
    |||||||| |||||| |||||  |||||||||||||||||| ||||||| ||| |||||||||||||||||| ||| ||||||||||||    
T  41197009 tgggcgagtaagagatatggagagggaaagagaaagatgatggaacatagtgtgaaaataatctaatgtttaaagagtatgataatact 41197097  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 294
Target Start/End: Complemental strand, 42650902 - 42650840
Alignment:
Q  232 ggaaagagaaagatgattgaacatattgtaaaaataatctaatgtttagagattatgataata 294  Q
    |||||||||| |||||| ||| ||| ||||||||||||||| |||| | ||| ||||||||||    
T  42650902 ggaaagagaaggatgatggaagataatgtaaaaataatctagtgttgaaagactatgataata 42650840  T

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Target: chr3 (Bit Score: 123; Significance: 3e-63; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 14 - 164
Target Start/End: Complemental strand, 30594112 - 30593963
Alignment:
Q  14 ttctccagggaagcattaaattagaaacggaagagtgtaaatttaaatcttgcagaaaatcattaacccattttcaatttagattaagtaactccataga 113  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||    
T  30594112 ttctccatggaagcattaaattagaaatggaagagtgtaaatttaaatcttgcggaaagtcatta-cccattttcaatttagattaagtaactccataga 30594014  T
Q  114 tgttagatgtccagaagaattacgaaggtgggagtaagaacaagagattga 164  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  30594013 tgttagatgtccaggagaattacgaaggtgggagtaagaacaagagattga 30593963  T

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Target: chr3; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 186 - 294
Target Start/End: Complemental strand, 30593931 - 30593823
Alignment:
Q  186 agattgatgttgttgtttgtggtgggcgagcaagagacatggatggggaaagagaaagatgattgaacatattgtaaaaataatctaatgtttagagatt 285  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |    
T  30593931 agattgatgttgttgtttgtggtgggcgagtaagagacatggatggggaaagagaaagatgatggaacatattgtaaaaataatctaatgtttagagagt 30593832  T
Q  286 atgataata 294  Q
    |||||||||    
T  30593831 atgataata 30593823  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 294
Target Start/End: Original strand, 50036292 - 50036389
Alignment:
Q  194 gttgttgtttgtggtgggcgagcaagagacatggatggggaaagagaaagatgattgaacatattgtaaaaataatctaatgtttagagattatgataat 293  Q
    |||||||||  || ||||| || |||||| |||||  ||||||||||| ||||   ||||||| ||| |||||||||||||||||| ||| |||||||||    
T  50036292 gttgttgttgttgttgggccaggaagagatatggagagggaaagagaatgatg---gaacatagtgtgaaaataatctaatgtttaaagagtatgataat 50036388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 296
Target Start/End: Complemental strand, 53714629 - 53714569
Alignment:
Q  236 agagaaagatgattgaacatattgtaaaaataatctaatgtttagagattatgataatact 296  Q
    |||||| |||||| ||| ||| |||||||||||| ||||||| ||||| ||||||||||||    
T  53714629 agagaaggatgatggaagataatgtaaaaataatataatgttgagagactatgataatact 53714569  T

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Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 68 - 162
Target Start/End: Complemental strand, 32966362 - 32966268
Alignment:
Q  68 gaaaatcattaacccattttcaatttagattaagtaactccatagatgttagatgtccagaagaattacgaaggtgggagtaagaacaagagatt 162  Q
    ||||||||||||| || ||||||||||||||||  |||| |||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||    
T  32966362 gaaaatcattaacacaatttcaatttagattaaacaacttcatagatgttagatgtccaggagaattatgaaggtgggagcaagaacaagagatt 32966268  T

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Target: chr8; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 194 - 296
Target Start/End: Complemental strand, 37785116 - 37785014
Alignment:
Q  194 gttgttgtttgtggtgggcgagcaagagacatggatggggaaagagaaagatgattgaacatattgtaaaaataatctaatgtttagagattatgataat 293  Q
    |||||||||  || |||||||| |||||| |||||  |||||||||||||||||| ||||||| |||||||||||||||||||||| ||| |||||||||    
T  37785116 gttgttgttgttgttgggcgagtaagagatatggagagggaaagagaaagatgatggaacatagtgtaaaaataatctaatgtttaaagagtatgataat 37785017  T
Q  294 act 296  Q
    |||    
T  37785016 act 37785014  T

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Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 195 - 296
Target Start/End: Complemental strand, 35971321 - 35971220
Alignment:
Q  195 ttgttgtttgtggtgggcgagcaagagacatggatggggaaagagaaagatgattgaacatattgtaaaaataatctaatgtttagagattatgataata 294  Q
    ||||||||  || |||||||| |||||| |||||  |||||||||||||||||| ||||||| ||| |||||||||||||||||| | | ||||||||||    
T  35971321 ttgttgttgttgttgggcgagtaagagatatggagagggaaagagaaagatgatggaacatagtgtgaaaataatctaatgtttaaaaagtatgataata 35971222  T
Q  295 ct 296  Q
    ||    
T  35971221 ct 35971220  T

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Target: chr8; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 217 - 296
Target Start/End: Original strand, 2707561 - 2707640
Alignment:
Q  217 aagagacatggatggggaaagagaaagatgattgaacatattgtaaaaataatctaatgtttagagattatgataatact 296  Q
    |||||| |||||  |||||||||||||||||| ||||||  ||| |||||||||||||||||| ||| ||||||||||||    
T  2707561 aagagatatggagagggaaagagaaagatgatggaacatggtgtgaaaataatctaatgtttaaagagtatgataatact 2707640  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 269
Target Start/End: Original strand, 7217642 - 7217718
Alignment:
Q  193 tgttgttgtttgtggtgggcgagcaagagacatggatggggaaagagaaagatgattgaacatattgtaaaaataat 269  Q
    ||||||||||  || |||||||| |||||| |||||  |||||||||||||||||| ||||||| ||| || |||||    
T  7217642 tgttgttgttgttgttgggcgagtaagagatatggagagggaaagagaaagatgatggaacatagtgtgaatataat 7217718  T

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Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 194 - 296
Target Start/End: Complemental strand, 26420080 - 26419978
Alignment:
Q  194 gttgttgtttgtggtgggcgagcaagagacatggatggggaaagagaaagatgattgaacatattgtaaaaataatctaatgtttagagattatgataat 293  Q
    |||||||||  || |||||||| |||||| |||||  |||||||||||||||||| ||||||| ||| |||||||||||||||||| ||| |||||||||    
T  26420080 gttgttgttgttgttgggcgagtaagagatatggagagggaaagagaaagatgatggaacatagtgtgaaaataatctaatgtttaaagagtatgataat 26419981  T
Q  294 act 296  Q
    |||    
T  26419980 act 26419978  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 194 - 296
Target Start/End: Original strand, 14800449 - 14800551
Alignment:
Q  194 gttgttgtttgtggtgggcgagcaagagacatggatggggaaagagaaagatgattgaacatattgtaaaaataatctaatgtttagagattatgataat 293  Q
    |||||||||  || |||||||| |||||| |||||  |||||||||||||||||| ||||||| ||| |||||||| ||||||||| ||| |||||||||    
T  14800449 gttgttgttgttgttgggcgagtaagagatatggagagggaaagagaaagatgatggaacatagtgtgaaaataatataatgtttaaagagtatgataat 14800548  T
Q  294 act 296  Q
    |||    
T  14800549 act 14800551  T

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Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 194 - 296
Target Start/End: Original strand, 23989257 - 23989359
Alignment:
Q  194 gttgttgtttgtggtgggcgagcaagagacatggatggggaaagagaaagatgattgaacatattgtaaaaataatctaatgtttagagattatgataat 293  Q
    |||||||||  || |||||||| |||||| |||||  |||||||||||||||||| ||||||| ||| |||||||||||||||||| ||| |||||||||    
T  23989257 gttgttgttgttgttgggcgagtaagagatatggagagggaaagagaaagatgatggaacataatgtgaaaataatctaatgtttaaagagtatgataat 23989356  T
Q  294 act 296  Q
    |||    
T  23989357 act 23989359  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 208 - 296
Target Start/End: Original strand, 29100974 - 29101062
Alignment:
Q  208 tgggcgagcaagagacatggatggggaaagagaaagatgattgaacatattgtaaaaataatctaatgtttagagattatgataatact 296  Q
    |||||||| |||||| | |||  ||||||||||| |||||| ||||||| ||| |||||||| ||||||||| ||| ||||||||||||    
T  29100974 tgggcgagtaagagatacggagagggaaagagaatgatgatggaacatagtgtgaaaataatataatgtttaaagagtatgataatact 29101062  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 294
Target Start/End: Complemental strand, 6085015 - 6084954
Alignment:
Q  233 gaaagagaaagatgattgaacatattgtaaaaataatctaatgtttagagattatgataata 294  Q
    ||||||||| |||||| ||| ||| ||||||||||||||| |||| | ||| ||||||||||    
T  6085015 gaaagagaaggatgatggaagataatgtaaaaataatctagtgttgaaagactatgataata 6084954  T

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Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 194 - 296
Target Start/End: Original strand, 49304638 - 49304740
Alignment:
Q  194 gttgttgtttgtggtgggcgagcaagagacatggatggggaaagagaaagatgattgaacatattgtaaaaataatctaatgtttagagattatgataat 293  Q
    |||||||||  || |||||||| |||||| |||||  |||||||||||||||||| ||||||| ||| |||||||||||||||||| ||| |||||||||    
T  49304638 gttgttgttgttgttgggcgagtaagagatatggagagggaaagagaaagatgatggaacatagtgtgaaaataatctaatgtttaaagagtatgataat 49304737  T
Q  294 act 296  Q
    |||    
T  49304738 act 49304740  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 208 - 296
Target Start/End: Original strand, 16264632 - 16264720
Alignment:
Q  208 tgggcgagcaagagacatggatggggaaagagaaagatgattgaacatattgtaaaaataatctaatgtttagagattatgataatact 296  Q
    ||||| || |||||| |||||  |||||||||||||||||| ||||||| ||| |||||||||||||||||| ||| ||||||||||||    
T  16264632 tgggcaagtaagagatatggagagggaaagagaaagatgatggaacatagtgtgaaaataatctaatgtttaaagagtatgataatact 16264720  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 296
Target Start/End: Complemental strand, 45597769 - 45597706
Alignment:
Q  233 gaaagagaaagatgattgaacatattgtaaaaataatctaatgtttagagattatgataatact 296  Q
    ||||||||| |||||| ||| ||| |||||||||||| ||||||| ||||| ||||||||||||    
T  45597769 gaaagagaaggatgatggaagataatgtaaaaataatataatgttgagagactatgataatact 45597706  T

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Target: scaffold0015 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 194 - 296
Target Start/End: Complemental strand, 35144 - 35042
Alignment:
Q  194 gttgttgtttgtggtgggcgagcaagagacatggatggggaaagagaaagatgattgaacatattgtaaaaataatctaatgtttagagattatgataat 293  Q
    |||||||||  || ||| |||| |||||| |||||  |||||||||||||||||| ||||||| ||| |||||||||||||||||| ||| |||||||||    
T  35144 gttgttgttgttgttggacgagtaagagatatggagagggaaagagaaagatgatggaacatagtgtgaaaataatctaatgtttaaagagtatgataat 35045  T
Q  294 act 296  Q
    |||    
T  35044 act 35042  T

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Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 194 - 296
Target Start/End: Original strand, 6231008 - 6231110
Alignment:
Q  194 gttgttgtttgtggtgggcgagcaagagacatggatggggaaagagaaagatgattgaacatattgtaaaaataatctaatgtttagagattatgataat 293  Q
    |||||||||  || ||| |||| |||||| |||||  |||||||||||||||||| ||||||| ||| |||||||||||||||||| ||| |||||||||    
T  6231008 gttgttgttgttgttggacgagtaagagatatggagagggaaagagaaagatgatggaacatagtgtgaaaataatctaatgtttaaagagtatgataat 6231107  T
Q  294 act 296  Q
    |||    
T  6231108 act 6231110  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 194 - 296
Target Start/End: Original strand, 56396471 - 56396573
Alignment:
Q  194 gttgttgtttgtggtgggcgagcaagagacatggatggggaaagagaaagatgattgaacatattgtaaaaataatctaatgtttagagattatgataat 293  Q
    |||||||||  || |||||||| |||||| ||| |  |||||||||||||||||| ||||||| ||| |||||||||||||||||| ||| |||||||||    
T  56396471 gttgttgttgttgttgggcgagtaagagatatgaagagggaaagagaaagatgatggaacatagtgtgaaaataatctaatgtttaaagagtatgataat 56396570  T
Q  294 act 296  Q
    |||    
T  56396571 act 56396573  T

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