View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18563_high_13 (Length: 346)
Name: NF18563_high_13
Description: NF18563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18563_high_13 |
 | |
|
| [»] scaffold0036 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 26672104 - 26671805
Alignment:
| Q |
1 |
tagattttgttgtaatgaatgggggattggtttggaaattgaagatgctaagagggacaaaattgagattcttgtgaaggagttaatggaaggagaaaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
26672104 |
tagattttgttgtaatgaatgggggattggtttggagattgaagatgctaagagggacaaaatagagattcttgtgaaggagttaatggaaggagaaaag |
26672005 |
T |
|
| Q |
101 |
ggtaaagagatgaaagaaaaagctttgcaatggaagaaattggcacacaatgctgcttctggtcctcatggatcatcatttatgaatcttgagaacctca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26672004 |
ggtaaagagatgaaagaaaaagctttgcaatggaagaaattggcacacaatgctgcttctggtcctcatggatcatcatttatgaatcttgagaacctca |
26671905 |
T |
|
| Q |
201 |
ttcatgatgttctcctcaagtgaagtgaacatttgatttagtacttgatgaatttatcttgtaaaattaatttgttttagtgatgtgtgtatgagtgaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26671904 |
ttcatgatgttctcctcaagtgaagtgaacatttgatttagtacttgatgaatttatcttgtaaaattaatttgttttagtgatgtgtgtatgagtgaaa |
26671805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 26943702 - 26943403
Alignment:
| Q |
1 |
tagattttgttgtaatgaatgggggattggtttggaaattgaagatgctaagagggacaaaattgagattcttgtgaaggagttaatggaaggagaaaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
26943702 |
tagattttgttgtaatgaatgggggattggtttggagattgaagatgctaagagggacaaaatagagattcttgtgaaggagttaatggaaggagaaaag |
26943603 |
T |
|
| Q |
101 |
ggtaaagagatgaaagaaaaagctttgcaatggaagaaattggcacacaatgctgcttctggtcctcatggatcatcatttatgaatcttgagaacctca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26943602 |
ggtaaagagatgaaagaaaaagctttgcaatggaagaaattggcacacaatgctgcttctggtcctcatggatcatcatttatgaatcttgagaacctca |
26943503 |
T |
|
| Q |
201 |
ttcatgatgttctcctcaagtgaagtgaacatttgatttagtacttgatgaatttatcttgtaaaattaatttgttttagtgatgtgtgtatgagtgaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26943502 |
ttcatgatgttctcctcaagtgaagtgaacatttgatttagtacttgatgaatttatcttgtaaaattaatttgttttagtgatgtgtgtatgagtgaaa |
26943403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 26901390 - 26901264
Alignment:
| Q |
1 |
tagattttgttgtaatgaatgggggattggtttggaaattgaagatgctaagagggacaaaattgagattcttgtgaaggagttaatggaaggagaaaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26901390 |
tagattttgttgtaatgaatgggggattggtttggaaattgaagatgctaagagggataaaattgagattcttgtgaaggagttaatggaaggagaaaag |
26901291 |
T |
|
| Q |
101 |
ggtaaagagatgaaagaaaaagctttg |
127 |
Q |
| |
|
|||||||| |||||||| ||||||||| |
|
|
| T |
26901290 |
ggtaaagaaatgaaagagaaagctttg |
26901264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 146; Significance: 7e-77; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 5 - 210
Target Start/End: Original strand, 91542 - 91747
Alignment:
| Q |
5 |
ttttgttgtaatgaatgggggattggtttggaaattgaagatgctaagagggacaaaattgagattcttgtgaaggagttaatggaaggagaaaagggta |
104 |
Q |
| |
|
|||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||| || |||||||||| |
|
|
| T |
91542 |
ttttgttgtaatgagtgggagattggtttggagattgaagatgctaagagggacaaaattgagagccttgtgaaggagttgttggatggtgaaaagggta |
91641 |
T |
|
| Q |
105 |
aagagatgaaagaaaaagctttgcaatggaagaaattggcacacaatgctgcttctggtcctcatggatcatcatttatgaatcttgagaacctcattca |
204 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||| ||| |
|
|
| T |
91642 |
aagagatgaaagcaaaagctttgcaatggaagaaattggcacacaatgctgcttctggtccacatggatcatcctttatgaatctggagaacctctttcg |
91741 |
T |
|
| Q |
205 |
tgatgt |
210 |
Q |
| |
|
|||||| |
|
|
| T |
91742 |
tgatgt |
91747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University