View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18563_high_15 (Length: 329)
Name: NF18563_high_15
Description: NF18563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18563_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 8e-86; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 96 - 311
Target Start/End: Complemental strand, 34004546 - 34004333
Alignment:
| Q |
96 |
tatataacatttattactattaccaaaattaatcttattaggtatatataaatagatagaattagaggtagacacaatatatttaactgcttagatttt- |
194 |
Q |
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| T |
34004546 |
tatataacatttattactattaccaaaattaatcttattaggtatatataaatagatagaattagaggtagacacaatatatttaactgcttagattttt |
34004447 |
T |
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| Q |
195 |
cttaggcnnnnnnnnnnngtggtttgtaatggcagcttccttaaaaatggtgttgaaaatggcattgttgtttattgttattgtcggtgttatggtggga |
294 |
Q |
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| T |
34004446 |
catag---aaaaaaaaaagtggtttgtaatggcagcttccttaaaaatggtgttgaaaatggcattgttgtttattgttattgtcggtgttatggtggga |
34004350 |
T |
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| Q |
295 |
aacacccgaggaattga |
311 |
Q |
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||||||||||||||||| |
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| T |
34004349 |
aacacccgaggaattga |
34004333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 96 - 311
Target Start/End: Original strand, 34158151 - 34158365
Alignment:
| Q |
96 |
tatataacatttattactattaccaaaattaatcttattaggtatatataaatagatagaattagaggtagacacaatat--atttaactgcttagattt |
193 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||| |
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| T |
34158151 |
tatataacatttattactattaccaaaattaatcttattaggtatatataaatagatagaactagaggtagacacaatatagatttaactacttagattt |
34158250 |
T |
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| Q |
194 |
tcttaggcnnnnnnnnnnngtggtttgtaatggcagcttccttaaaaatggtgttgaaaatggcattgttgtttattgttattgtcggtgttatggtggg |
293 |
Q |
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|||||| ||||||||||||||| ||||||||| |||| || ||||||||||||||||| ||||||||||||||||| | ||||||| |
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| T |
34158251 |
tcttag---aaaaaaaaaattggtttgtaatggcaacttccttaacaatgatggtgaaaatggcattgttgcatattgttattgtcggtgctttggtggg |
34158347 |
T |
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| Q |
294 |
aaacacccgaggaattga |
311 |
Q |
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|||||||| ||||||||| |
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| T |
34158348 |
aaacacccaaggaattga |
34158365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 96 - 275
Target Start/End: Original strand, 34173870 - 34174047
Alignment:
| Q |
96 |
tatataacatttattactattaccaaaattaatcttattaggtatatataaatagatagaattagaggtagacacaatat--atttaactgcttagattt |
193 |
Q |
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||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
34173870 |
tatataacatttattactattaccaaatttaatcttattaagtatatataaatagatagaattagaggtagacacaatataaatttaactacttagattt |
34173969 |
T |
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| Q |
194 |
tcttaggcnnnnnnnnnnngtggtttgtaatggcagcttccttaaaaatggtgttgaaaatggcattgttgtttattgttat |
275 |
Q |
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|||| | || ||||||||||||| ||||||| || |||||||||||||||||||||||| |||||||||| |
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| T |
34173970 |
tctttg----aaaataaaagtagtttgtaatggcaacttccttgaagatggtgttgaaaatggcattgttgcttattgttat |
34174047 |
T |
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