View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18563_high_16 (Length: 300)
Name: NF18563_high_16
Description: NF18563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18563_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 47372957 - 47372669
Alignment:
| Q |
1 |
aatttttaatctacaaattactactttaagatacttaaacaatatcctaaaacacttgttatcatttctcgttaaaaagtaagtatcgaaggtgttttta |
100 |
Q |
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|||||| ||||| ||||||||||||||||||||||| |||||| | ||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
47372957 |
aattttcaatctgcaaattactactttaagatacttgaacaatgttctaaaacactt---accatttctcgttaaaaagtaagtatcgaaggtgttttta |
47372861 |
T |
|
| Q |
101 |
tttaatctctatccataatagaatgagacaaatcaatttact-cgttgagttatgattcattcaaaaaatggtttgttctttggggaagaagtccactct |
199 |
Q |
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||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
47372860 |
tttaatctctatctataatagaatgagacaaatcaatttaatgcgttgagttatgattcattcaaaaaatggtttgttctttagtgaagaagtccactct |
47372761 |
T |
|
| Q |
200 |
attttttatatataaatcatcgagcctactctacttcaacctcatcactcccacctcgtagtacctgaatctatatttcgtc-atcattcat |
290 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
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| T |
47372760 |
attttttatatataaatcatcgagtctactctacttcaacctcatcactcccacctcgtagtacctcaatctatatttcgtcaatcattcat |
47372669 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 31500221 - 31500254
Alignment:
| Q |
18 |
ttactactttaagatacttaaacaatatcctaaa |
51 |
Q |
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||||||||||||||||||||||||||| |||||| |
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| T |
31500221 |
ttactactttaagatacttaaacaataccctaaa |
31500254 |
T |
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