View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18563_high_23 (Length: 257)

Name: NF18563_high_23
Description: NF18563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18563_high_23
NF18563_high_23
[»] chr6 (7 HSPs)
chr6 (16-118)||(30943760-30943862)
chr6 (42-116)||(30954205-30954279)
chr6 (25-109)||(31222979-31223063)
chr6 (42-118)||(30959862-30959938)
chr6 (188-228)||(30943646-30943686)
chr6 (73-116)||(31213424-31213467)
chr6 (63-116)||(31229037-31229090)


Alignment Details
Target: chr6 (Bit Score: 79; Significance: 5e-37; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 30943862 - 30943760
Alignment:
Q  16 atagttaaagagagaaacataataggaaattagattatagatgtatcacctagaatgattttcattttccctttccagctcaactgcttacctgcgatag 115  Q
    ||||| |||| |||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  30943862 atagtaaaagggagaaatacaatagaaaattagattatagatgtatcacctagaatgattttcattttccctttccagctcagctgcttacctgcgatag 30943763  T
Q  116 ttg 118  Q
    |||    
T  30943762 ttg 30943760  T

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Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 42 - 116
Target Start/End: Complemental strand, 30954279 - 30954205
Alignment:
Q  42 aaattagattatagatgtatcacctagaatgattttcattttccctttccagctcaactgcttacctgcgatagt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||| ||||||||||    
T  30954279 aaattagattatagatgtatcacctagaatgattttcattttcccttgccaactcaaatgcttatctgcgatagt 30954205  T

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Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 109
Target Start/End: Complemental strand, 31223063 - 31222979
Alignment:
Q  25 gagagaaacataataggaaattagattatagatgtatcacctagaatgattttcattttccctttccagctcaactgcttacctg 109  Q
    |||||||| | ||||| || ||| || ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  31223063 gagagaaataaaatagaaatttatatcatagatgtatcacctagaatgattttcattttcccttgcctgctcaactgcttacctg 31222979  T

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Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 118
Target Start/End: Complemental strand, 30959938 - 30959862
Alignment:
Q  42 aaattagattatagatgtatcacctagaatgattttcattttccctttccagctcaactgcttacctgcgatagttg 118  Q
    |||||||| | ||| ||||| |||||||||||||||||||||||||| ||| ||||  |||||||||||||||||||    
T  30959938 aaattagactgtagttgtattacctagaatgattttcattttcccttgccaactcatttgcttacctgcgatagttg 30959862  T

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Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 30943686 - 30943646
Alignment:
Q  188 ctaataggtaagctgcatatgattggctaaagaagttggga 228  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  30943686 ctaataggtaagctgcatatgattggctaaagaagttggga 30943646  T

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Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 31213467 - 31213424
Alignment:
Q  73 attttcattttccctttccagctcaactgcttacctgcgatagt 116  Q
    |||||||||||||||| ||||||||||| |||||||||||||||    
T  31213467 attttcattttcccttgccagctcaactccttacctgcgatagt 31213424  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 116
Target Start/End: Complemental strand, 31229090 - 31229037
Alignment:
Q  63 acctagaatgattttcattttccctttccagctcaactgcttacctgcgatagt 116  Q
    |||| ||||||||||| ||||| ||| ||||||||| |||||||||| ||||||    
T  31229090 accttgaatgattttccttttctcttgccagctcaaatgcttacctgtgatagt 31229037  T

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