View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18563_high_3 (Length: 598)
Name: NF18563_high_3
Description: NF18563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18563_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 551; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 19 - 593
Target Start/End: Original strand, 54479020 - 54479593
Alignment:
| Q |
19 |
attaactcactccctcttattctttcaacacatcgatggatcccttcagagaaatcatgaatggctttgaagtaactcgagatggaaaaagtgtagtcat |
118 |
Q |
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| T |
54479020 |
attaactcactccctcttattctttcaacacatcgatggatcccttcagagatatcatgaatggctttgaagtaactcgagatggaaaaagtgtagtcat |
54479119 |
T |
|
| Q |
119 |
ccctgccccttttgtatggccgctgattgcagagcaaccgttcacagctacaaatatctcttgcaaaatagaatagttaatatcaccggagctgttcagt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
54479120 |
ccctgccccttttgtatggccgctgattgcagagcaaccgttcacagctacaaatatctcttgcaaaatagaatagttaatatcaccggagctgttccgt |
54479219 |
T |
|
| Q |
219 |
gcaagaaatgcaaagaaaagttccaaatgtcttttgatttgagagaaaaggttcctgaaatattgaagtttgttaccgaaaacaggaacgacatgcatga |
318 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54479220 |
gcaagaaatgcaaagaaaagttccaaatgtcttttcatttgagagaaaaggttcctgaaatattgaagtttgttaccgaaaacaggaacgacatgcatga |
54479319 |
T |
|
| Q |
319 |
cagggcgccaaccatttggatgaagccaacattgcctaattgtgtgcactgtaatcaacaaaacagtgtgaagccggtaattgctgacaagaaacggagt |
418 |
Q |
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| T |
54479320 |
cagggcgccaaccatttggatgaagccaacattgcctaattgtgtgcactgtaatcaacaaaacagtgtgaagccggtaattgctgacaagaaacggagt |
54479419 |
T |
|
| Q |
419 |
atcaactggctgtttctgttattaggacaaatgcttggctgctgcacgcgtaaacagctgaagtatttctgcaaacacaccaagaatcatgaatcaggtg |
518 |
Q |
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| T |
54479420 |
atcaactggctgtttctgttattaggacaaatgcttggctgctgcacgcgtaaacagctgaagtatttctgcaaacacaccaagaatcatgaatcaggtg |
54479519 |
T |
|
| Q |
519 |
ccaagaatagagttctttatttaacttatcttggactcttgcaaacaacttgatcatcccagaccctttgctact |
593 |
Q |
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| T |
54479520 |
ccaagaatagagttctttatttaacttatcttggactc-tgcaaacaacttgatcatcccagaccctttgatact |
54479593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 332 - 573
Target Start/End: Complemental strand, 25044551 - 25044311
Alignment:
| Q |
332 |
atttggatgaagccaacattgcctaattgtgtgcactgtaatcaacaaaacagtgtgaagccggtaattgctgacaagaaacggagtatcaactggctgt |
431 |
Q |
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|||| |||||| |||| |||||| | |||||||| || || || ||||||||||||||||| ||||||| || ||||| || |||||| ||| ||| |
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| T |
25044551 |
attttgatgaatccaagattgccaagatgtgtgcattgcaacaaagaaaacagtgtgaagccgataattgccgagaagaagaagaatatcaattggttgt |
25044452 |
T |
|
| Q |
432 |
ttctgttattaggacaaatgcttggctgctgcacgcgtaaacagctgaagtatttctgcaaacacaccaagaatcatgaatcaggtgccaagaatagagt |
531 |
Q |
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| T |
25044451 |
ttctgctgttgggacaaatgctgggttgttgcaatcttaaacaattgaagtatttttgcaagtataacaaccatcatagaacaggtgccaaaaatagggt |
25044352 |
T |
|
| Q |
532 |
tctttatttaacttatcttggactcttgcaaacaacttgatc |
573 |
Q |
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| T |
25044351 |
tctttatttaacttatcttgaact-atgcaaacaacttgatc |
25044311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 310 - 547
Target Start/End: Complemental strand, 25040835 - 25040598
Alignment:
| Q |
310 |
catgcatgacagggcgccaaccatttggatgaagccaacattgcctaattgtgtgcactgtaatcaacaaaacagtgtgaagccggtaattgctgacaag |
409 |
Q |
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||||||||| ||||| ||| |||| |||||| |||| |||||| || ||| |||| || |||||| |||| ||||| || ||||| |||||||| ||| |
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| T |
25040835 |
catgcatgatagggcaccacaaattttgatgaatccaaaattgccaaaatgtttgcattgcaatcaagaaaatagtgttaaaccggtgattgctgagaag |
25040736 |
T |
|
| Q |
410 |
aaacggagtatcaactggctgtttctgttattaggacaaatgcttggctgctgcacgcgtaaacagctgaagtatttctgcaaacacaccaagaatcatg |
509 |
Q |
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||| || |||||| ||| |||||||||| | |||||||| |||| || |||| || | |||| |||||||||| ||||| ||| | ||||| |
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| T |
25040735 |
aaaaagaatatcaattggttgtttctgttgctgggacaaataattggttgttgcaagcttgaacaattgaagtatttttgcaagtacaacggtcatcatc |
25040636 |
T |
|
| Q |
510 |
aatcaggtgccaagaatagagttctttatttaacttat |
547 |
Q |
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| | |||||||||||||||||||||||||| |||||| |
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| T |
25040635 |
gagctggtgccaagaatagagttctttatttgacttat |
25040598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 174 - 259
Target Start/End: Complemental strand, 25040971 - 25040886
Alignment:
| Q |
174 |
atctcttgcaaaatagaatagttaatatcaccggagctgttcagtgcaagaaatgcaaagaaaagttccaaatgtcttttgatttg |
259 |
Q |
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||||||| ||||| ||||| |||| |||||||| | |||||| ||||| | |||||| ||||||||||||||||||||||||| |
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| T |
25040971 |
atctcttacaaaacagaatctttaacatcaccggcgatgttcaatgcaatagttgcaaaacaaagttccaaatgtcttttgatttg |
25040886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 359 - 573
Target Start/End: Complemental strand, 10124400 - 10124187
Alignment:
| Q |
359 |
tgtgtgcactgtaatcaacaaaacagtgtgaagccggtaattgctgacaagaaacggagtatcaactggctgtttctgttattaggacaaatgcttggct |
458 |
Q |
| |
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|||||||| || |||||| ||||| ||||||| |||||||||||||| |||||| || |||||| ||| |||||||||| |||||||||||||||| | |
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| T |
10124400 |
tgtgtgcattgcaatcaagaaaactgtgtgaaaccggtaattgctgagaagaaaaagaatatcaattggttgtttctgttgctaggacaaatgcttggtt |
10124301 |
T |
|
| Q |
459 |
gctgcacgcgtaaacagctgaagtatttctgcaaacacaccaagaatcatgaatcaggtgccaagaatagagttctttatttaacttatcttggactctt |
558 |
Q |
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| || | || | |||| |||| ||||| ||||| | | | ||||| | | |||||||||||||| |||||||||||||||||||||| ||| || |
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| T |
10124300 |
gttgtaagcttgaacaattgaaatatttttgcaagtataatagccatcatcgaaccggtgccaagaatagggttctttatttaacttatcttgaact-tt |
10124202 |
T |
|
| Q |
559 |
gcaaacaacttgatc |
573 |
Q |
| |
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||||||||||||||| |
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| T |
10124201 |
gcaaacaacttgatc |
10124187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 378 - 575
Target Start/End: Complemental strand, 28649982 - 28649786
Alignment:
| Q |
378 |
aaaacagtgtgaagccggtaattgctgacaagaaacggagtatcaactggctgtttctgttattaggacaaatgcttggctgctgcacgcgtaaacagct |
477 |
Q |
| |
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|||||| |||||||||| |||||||||| |||||| || ||| || ||| ||||| |||| || |||||||||||||| || |||| | |||||| | |
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| T |
28649982 |
aaaacaatgtgaagccgataattgctgagaagaaaaagaatattaattggttgtttttgttgttgggacaaatgcttggttgttgcaatcttaaacaatt |
28649883 |
T |
|
| Q |
478 |
gaagtatttctgcaaacacaccaagaatcatgaatcaggtgcc-aagaatagagttctttatttaacttatcttggactcttgcaaacaacttgatcat |
575 |
Q |
| |
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| T |
28649882 |
gaagtatttttgcaagtataacaaccatcatagaaca-atgccaaaaaatagagttctttatttaacttatcttgaact-atgcaaataacttgatcat |
28649786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 371 - 547
Target Start/End: Original strand, 21393068 - 21393244
Alignment:
| Q |
371 |
aatcaacaaaacagtgtgaagccggtaattgctgacaagaaacggagtatcaactggctgtttctgttattaggacaaatgcttggctgctgcacgcgta |
470 |
Q |
| |
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|||||| ||||||||||||| ||||||||||| || |||||| || |||||| ||| ||||||| || | ||||||||||| || || |||| || | |
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| T |
21393068 |
aatcaagaaaacagtgtgaaaccggtaattgccgagaagaaaaagaatatcaattggttgtttctattgctgggacaaatgctcggttgttgcaagcttg |
21393167 |
T |
|
| Q |
471 |
aacagctgaagtatttctgcaaacacaccaagaatcatgaatcaggtgccaagaatagagttctttatttaacttat |
547 |
Q |
| |
|
|||| |||||||||| ||||| ||| ||| ||||| | | |||||||||||||||||||||||||| |||||| |
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|
| T |
21393168 |
aacaattgaagtatttttgcaagtacaacaatcatcatcgaaccggtgccaagaatagagttctttatttgacttat |
21393244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 311 - 465
Target Start/End: Complemental strand, 1975327 - 1975173
Alignment:
| Q |
311 |
atgcatgacagggcgccaaccatttggatgaagccaacattgcctaattgtgtgcactgtaatcaacaaaacagtgtgaagccggtaattgctgacaaga |
410 |
Q |
| |
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|||| ||| ||||| ||||| ||||| ||| | |||| ||||||||| ||||| || || |||||| |||| |||||||| || ||||||||| | |||| |
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| T |
1975327 |
atgcgtgatagggcaccaacaatttgaatgcatccaatattgcctaaatgtgtacattgcaatcaaaaaaatagtgtgaaacctgtaattgctaagaaga |
1975228 |
T |
|
| Q |
411 |
aacggagtatcaactggctgtttctgttattaggacaaatgcttggctgctgcac |
465 |
Q |
| |
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|| ||||||||| ||| ||||| |||| | |||||||||||||| || ||||| |
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| T |
1975227 |
aaaagagtatcaattggttgtttatgttgatgggacaaatgcttggttgttgcac |
1975173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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