View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18563_high_5 (Length: 509)
Name: NF18563_high_5
Description: NF18563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18563_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 215 - 466
Target Start/End: Complemental strand, 22191280 - 22191029
Alignment:
| Q |
215 |
aaataatgtcttacaatccataaaagagatacaaactctcataacaaaacatattgtatgcattacacaccacaaactgggtgaagcaaaagcaaaatgc |
314 |
Q |
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| T |
22191280 |
aaataaagtcttacaatccatcaaagagatacaaactctcataacaaaacatattgtatgcattacacaccacaaactgggtgaagcaaaagcaaaatgc |
22191181 |
T |
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| Q |
315 |
cttgaaccagtcacttatttagaagtttcacatgcctagaaaagaagtgccaaagcagaaattgaaaatgccgtagttataaacctattcatagtttata |
414 |
Q |
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| T |
22191180 |
cttgaaccagtcacttatttagaagtttcacatgcctagaaaagaagtgccaaagcagaaattgaaaatgccgtagttataaacctattgatagtttata |
22191081 |
T |
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| Q |
415 |
taatttattttctttgagagtacgttcctcagtgaaggtgaatcaataacaa |
466 |
Q |
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| T |
22191080 |
taatttattttctttgagagtaaggtcctcagtgaaggtgaatcaataacaa |
22191029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 166 - 210
Target Start/End: Complemental strand, 6983385 - 6983341
Alignment:
| Q |
166 |
gatgacattaaattggtaatatcagagatgcatttgaaaataaat |
210 |
Q |
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| T |
6983385 |
gatgacattaagttggtaatataggagatgaatttgaaaataaat |
6983341 |
T |
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