View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18563_low_12 (Length: 400)
Name: NF18563_low_12
Description: NF18563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18563_low_12 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 24 - 400
Target Start/End: Original strand, 47737747 - 47738120
Alignment:
| Q |
24 |
cacctaatctttgtatctcattttattaacattgttttattctctttttcattacaacnnnnnnnnggatgtgaagacgatagtgattgtccacaaattt |
123 |
Q |
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| T |
47737747 |
cacccaatctttgtatctcattttattaacattgttttattctctttttcattacaacaaaaaaa-ggatgtgaagacgatagtgattgtccacaaattt |
47737845 |
T |
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| Q |
124 |
tcaacttccatccttttatttgtaagtgtattaacaacgaatgcgaaaaggttatactgcaaaaaggttatatgagtatgaaacccaagatattacacaa |
223 |
Q |
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| T |
47737846 |
tcaacttccatccttttatttgtaagtgtattaacaacgaatgcgaaaaggttatactgcaaaaaggttatatgagtatgaaacccaagatattacacaa |
47737945 |
T |
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| Q |
224 |
acgctatacaaggaaggaagaatgagttcttacactagcaaaagaatatatgcaataattgtatccatgggttacatgcgttgccatttaaa--ttttgt |
321 |
Q |
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| T |
47737946 |
acgctatac----aaggaagaatgagttcttacactagcaaaaaaatatatgcaataattgtatccatgggttacatgggttgccatttaaattttttgt |
47738041 |
T |
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| Q |
322 |
tgtaattctgggaccttgcatttatggatttgtattctcatatgtcggtnnnnnnntgaattaagaaattaaggaatat |
400 |
Q |
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| T |
47738042 |
tgtaattctgggaccttgcatttatggatttgtattctcatatgtcggtaaaaaaatgaattaagaaattaaggaatat |
47738120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 200 - 280
Target Start/End: Original strand, 47742208 - 47742283
Alignment:
| Q |
200 |
tatgaaacccaagatattacacaaacgctatacaaggaaggaagaatgagttcttacactagcaaaagaatatatgcaata |
280 |
Q |
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| T |
47742208 |
tatgaaacccaagatattacacaagcgccatac----aaggaagaataagttcttacactagcaaaag-atatatgcaata |
47742283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 47741984 - 47742034
Alignment:
| Q |
31 |
tctttgtatctcattttattaacattgttttattctctttttcattacaac |
81 |
Q |
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| T |
47741984 |
tctttttatctcattttattaacatttttttattctctttttcattacaac |
47742034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 316 - 366
Target Start/End: Original strand, 47742467 - 47742517
Alignment:
| Q |
316 |
ttttgttgtaattctgggaccttgcatttatggatttgtattctcatatgt |
366 |
Q |
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| T |
47742467 |
tttttttgtaatgctgggaccttgcatttatggattagtattctaatatgt |
47742517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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