View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18563_low_13 (Length: 376)
Name: NF18563_low_13
Description: NF18563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18563_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 11350117 - 11350173
Alignment:
| Q |
1 |
tcatcaaattatgttgtaataatgaagatattcgtgtgtcaaatgatattttagaac |
57 |
Q |
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| T |
11350117 |
tcatcaaattatgttgtaataatgaagctattcgtgtgtcaaatgatattttagaac |
11350173 |
T |
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Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 11349723 - 11349779
Alignment:
| Q |
1 |
tcatcaaattatgttgtaataatgaagatattcgtgtgtcaaatgatattttagaac |
57 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
11349723 |
tcatcaaattatgttgtaataatgaagctattcgtgtgtcaaaggatattttagaac |
11349779 |
T |
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