View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18563_low_14 (Length: 367)

Name: NF18563_low_14
Description: NF18563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18563_low_14
NF18563_low_14
[»] chr2 (2 HSPs)
chr2 (1-351)||(40767032-40767382)
chr2 (127-167)||(41366101-41366141)
[»] chr7 (1 HSPs)
chr7 (128-167)||(29372772-29372811)
[»] chr4 (2 HSPs)
chr4 (127-164)||(3649701-3649738)
chr4 (29-105)||(25978487-25978565)
[»] chr8 (1 HSPs)
chr8 (127-167)||(10656692-10656732)
[»] chr5 (2 HSPs)
chr5 (127-167)||(6284295-6284335)
chr5 (127-171)||(35701332-35701376)
[»] chr1 (2 HSPs)
chr1 (127-167)||(6029367-6029407)
chr1 (127-167)||(13994141-13994181)


Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 40767382 - 40767032
Alignment:
Q  1 gtgtttatcatttcttataactctaatggtgcatttgatatgttaaaaaataagggaccaaacaaagacaacttcaattatagtgtttgattttaaaact 100  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  40767382 gtgtttatcatttcttataactctaacggtgcatttgatatgttaaaaaacaagggaccaaacaaagacaacttcagttatagtgtttgattttaaaact 40767283  T
Q  101 gtttctaggattgaacaaattagaggggacaaaaactaaattttttgtccctcactaaaccacaacataacnnnnnnnagaggtacaagttgtctaaaat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  40767282 gtttctaggattgaacaaattagaggggacaaaaactaaattttttgtccctcactaaaccacaacataactttttttagaggtacaagttgtctaaaat 40767183  T
Q  201 accgtgacattttatccaccaagcattgagataaaaagatgtttaatatcttaaaaatctttcatgtgttgttctgtcttctactgttacgtgattacta 300  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40767182 accgtgacattttatccaccaagcattgagacaaaaagatgtttaataccttaaaaatctttcatgtgttgttctgtcttctactgttacgtgattacta 40767083  T
Q  301 actttttaccatatcaaacacgctcttagatagactaaagtttgtaggaag 351  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40767082 actttttaccatatcaaacacgctcttagatagactaaagtttgtaggaag 40767032  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 167
Target Start/End: Original strand, 41366101 - 41366141
Alignment:
Q  127 ggacaaaaactaaattttttgtccctcactaaaccacaaca 167  Q
    ||||||||||| || |||||||||||||| |||||||||||    
T  41366101 ggacaaaaactgaaatttttgtccctcaccaaaccacaaca 41366141  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 128 - 167
Target Start/End: Original strand, 29372772 - 29372811
Alignment:
Q  128 gacaaaaactaaattttttgtccctcactaaaccacaaca 167  Q
    ||||||||||||| ||||||||| ||||||||||||||||    
T  29372772 gacaaaaactaaaatttttgtccgtcactaaaccacaaca 29372811  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 164
Target Start/End: Complemental strand, 3649738 - 3649701
Alignment:
Q  127 ggacaaaaactaaattttttgtccctcactaaaccaca 164  Q
    |||||||||||||| |||||||||||||| ||||||||    
T  3649738 ggacaaaaactaaaatttttgtccctcaccaaaccaca 3649701  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 105
Target Start/End: Original strand, 25978487 - 25978565
Alignment:
Q  29 gtgcatttgatatgttaaaaaataagggaccaaacaaagacaacttcaattat--agtgtttgattt-taaaactgtttc 105  Q
    |||| |||||| ||||||||||||| ||||   ||||| ||||||||||||||  |||||||||||| ||||||||||||    
T  25978487 gtgcgtttgatttgttaaaaaataaaggacatgacaaa-acaacttcaattatccagtgtttgatttgtaaaactgtttc 25978565  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 167
Target Start/End: Original strand, 10656692 - 10656732
Alignment:
Q  127 ggacaaaaactaaattttttgtccctcactaaaccacaaca 167  Q
    ||||||||||| |||||||||||| |||| |||||||||||    
T  10656692 ggacaaaaactgaattttttgtccttcacaaaaccacaaca 10656732  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 167
Target Start/End: Original strand, 6284295 - 6284335
Alignment:
Q  127 ggacaaaaactaaattttttgtccctcactaaaccacaaca 167  Q
    ||||||||||| | ||||||||||||||| |||||||||||    
T  6284295 ggacaaaaacttatttttttgtccctcaccaaaccacaaca 6284335  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 171
Target Start/End: Complemental strand, 35701376 - 35701332
Alignment:
Q  127 ggacaaaaactaaattttttgtccctcactaaaccacaacataac 171  Q
    ||||||||||| |  |||||||||||||| |||||||||||||||    
T  35701376 ggacaaaaactcatatttttgtccctcaccaaaccacaacataac 35701332  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 167
Target Start/End: Original strand, 6029367 - 6029407
Alignment:
Q  127 ggacaaaaactaaattttttgtccctcactaaaccacaaca 167  Q
    ||||||||||| || |||||||||||||| |||||||||||    
T  6029367 ggacaaaaactgaaatttttgtccctcaccaaaccacaaca 6029407  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 167
Target Start/End: Original strand, 13994141 - 13994181
Alignment:
Q  127 ggacaaaaactaaattttttgtccctcactaaaccacaaca 167  Q
    ||||||||||| || |||||||||||||| |||||||||||    
T  13994141 ggacaaaaactgaaatttttgtccctcaccaaaccacaaca 13994181  T

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