View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18563_low_16 (Length: 342)
Name: NF18563_low_16
Description: NF18563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18563_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 7 - 334
Target Start/End: Original strand, 54012690 - 54013017
Alignment:
| Q |
7 |
cgtagtgccatttcctgcattgataaagattcaatacaactttattatcataatgtggattattaatatttagatgaaaatagtgaattaatcataggac |
106 |
Q |
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| T |
54012690 |
cgtagcgccatttcctgcattgataaagattcaatacaactttattatcataatgtggattattagtatttagatgaaaatagtgaattaatcataggac |
54012789 |
T |
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| Q |
107 |
aagttaattacctgaacctgaacttaatgtttcgtgtaatgtccatgaatttttgttaagagtattgcctaatgcgtcaaagagaggcataaagaggcag |
206 |
Q |
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| T |
54012790 |
aagttaattacctgaacctgaacttaatgtttcgtgtaatgtccatgaatttttgttaagagtattgcctaatgcgtcaaagagaggcataaagaggcag |
54012889 |
T |
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| Q |
207 |
aaattggtgtccttttcagtgtggtgaagattgtgatatctgcatagcatagaaaaagacatgaatcaatacacattggttggaccactatatagataaa |
306 |
Q |
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| T |
54012890 |
aaattggtgtccttttcagtgtggtgaagattgtgatatctgcatagcatagaaaaagacatgaatcaatacacattggttggaccactatatagataaa |
54012989 |
T |
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| Q |
307 |
tgcatgctcatttctaatgatattcttc |
334 |
Q |
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|||| |||||||||||||||| |||||| |
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| T |
54012990 |
tgcaggctcatttctaatgattttcttc |
54013017 |
T |
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