View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18563_low_2 (Length: 881)
Name: NF18563_low_2
Description: NF18563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18563_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 477; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 357 - 864
Target Start/End: Original strand, 42935391 - 42935901
Alignment:
| Q |
357 |
tcagagatattatgtagaaacacatattatcaagttaactaactagtaggactattagcagcagaggaaattaggtgaagcttgatattctccagctgca |
456 |
Q |
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| T |
42935391 |
tcagagatattatgtagaaacacatattatcaagttaattaactagtaggactattagcagcagaggaaattaggtgaagcttgatattctccagctgca |
42935490 |
T |
|
| Q |
457 |
tctccagctgcaagttcttcttcttctcattttccaattctgtcctcaacttagagatctcttgcaccattttctcatcactttcagccacatgaatctc |
556 |
Q |
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| T |
42935491 |
tctccagctgcaagttcttcttcttctcattttccaattctgtcctcaacttagagatctcttgcaccattttctcatcactttcagccacatgaatctc |
42935590 |
T |
|
| Q |
557 |
ctctccaccaattagattcattagaaacttaacttgtcccaactcttgttccaagctctctttcaacacattcaacgttgccaacgtagcttcgcggttc |
656 |
Q |
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| T |
42935591 |
ctctccaccaattagattcattagaaacttaacttgtcccaactcttgttccaagctctctttcaacacattcaacgttgccaacgtagcttcacggttc |
42935690 |
T |
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| Q |
657 |
ttaacaacaccaccaacattttcatgatca---acatcagtagtattggtctttggctccatcacagttcctgatgctgtaacaacatcatcctcttgga |
753 |
Q |
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| T |
42935691 |
ttaacaacaccaccgacattttcatgatcaaccacatcagaagtattggtctttggctccatcacagttcctgatgctgtaacaacagcatcctcttgga |
42935790 |
T |
|
| Q |
754 |
tcactttttcttcttcgaaccgaacttgtttcacaacttcatcatctttgctttgatcctttgggaatacaggcacaagttccaatccatcttcattgaa |
853 |
Q |
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| T |
42935791 |
tcactttttcttcttcgaaccgaacttgtttcacaacttcatcatctttgctttgatcctttgggaatacaggcacaagttccaatccatcttcattgaa |
42935890 |
T |
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| Q |
854 |
attccagccac |
864 |
Q |
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| T |
42935891 |
attccagccac |
42935901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 42935077 - 42935391
Alignment:
| Q |
1 |
tatttccgatttttcatttctctgttaaaataaaactatcccctgccatctagtatttgagaagttcatattgaacgcttgctacagatgcaacggtctc |
100 |
Q |
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| T |
42935077 |
tatttccgatttttcatttctctgttaaaataaaactatcccctgccatctagtatttgagaagttcatattgaacgcttgctacagatgcaacggtctc |
42935176 |
T |
|
| Q |
101 |
tgtaggaccgttggatctaaatttattaaaattgatgtgacggtctctatagggccgtttcatctaaatttattaaaatttagatccaactatcttataa |
200 |
Q |
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| T |
42935177 |
tgtaggaccgttggatctaaatttattaaaattgatgtgacggtctctatagggccgtttcatctaaatttattaaaatttagatccaactatcttataa |
42935276 |
T |
|
| Q |
201 |
tccgttgaactgcgcaacagttatagagaatccaaattccgtaacaggagcttaaattctctatgattgttgcacatctccagtagagtatctaacttta |
300 |
Q |
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||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |
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| T |
42935277 |
tccgttgcactgtgcaacagttatagagaatccaaattccgtaacaggagcttaaattctctatgattgttgcacatctccggtagagtatctaaattta |
42935376 |
T |
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| Q |
301 |
agaaatacaacatat |
315 |
Q |
| |
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| T |
42935377 |
agaaatacaacatat |
42935391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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