View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18563_low_21 (Length: 292)
Name: NF18563_low_21
Description: NF18563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18563_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 10 - 276
Target Start/End: Complemental strand, 44800259 - 44799993
Alignment:
| Q |
10 |
tccatctcatttacatcaaattcccccatcaatttcggatcagccgcctcaacgagtctattcttttcccacagtttccaaacatagtcaccaatgacag |
109 |
Q |
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| T |
44800259 |
tccatctcaattacatcaaattcccccatcaatttcggatcagccgcctcaacgagtctattcttttcccacagactccaaacatagtcaccaatgacag |
44800160 |
T |
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| Q |
110 |
ttccatcgtctgcaacaggcttcctcccagtcgcaacttcaattatcacgacaccaaaactatatacatcggtcttcacggttggaacacccgaataaac |
209 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
44800159 |
ttccgtcgtctgcaacaggcttcctcccagtcgcaacttcaattatcacgacaccaaaactatatacatcagtcttcacggttggaacacccgaataaac |
44800060 |
T |
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| Q |
210 |
atattcgggtgcaagatatcccattgttcctgctggtatagtagcatcccttgtactagaactatgt |
276 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44800059 |
atattcgggtgcaagatatcccattgttcctgctggtatagtagcatcccttgtactagaactatgt |
44799993 |
T |
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