View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18563_low_24 (Length: 281)

Name: NF18563_low_24
Description: NF18563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18563_low_24
NF18563_low_24
[»] chr1 (17 HSPs)
chr1 (10-264)||(31100439-31100688)
chr1 (67-258)||(27064953-27065144)
chr1 (136-262)||(24075519-24075645)
chr1 (191-262)||(3850840-3850911)
chr1 (191-262)||(42137676-42137747)
chr1 (191-262)||(11051137-11051208)
chr1 (191-262)||(11829129-11829200)
chr1 (191-262)||(41512196-41512267)
chr1 (209-262)||(46033652-46033705)
chr1 (191-262)||(1762270-1762341)
chr1 (226-261)||(11051073-11051108)
chr1 (221-262)||(13509915-13509956)
chr1 (206-262)||(49430700-49430756)
chr1 (200-267)||(27416626-27416692)
chr1 (221-262)||(7385307-7385348)
chr1 (221-262)||(47655863-47655904)
chr1 (222-262)||(44740228-44740268)
[»] chr2 (12 HSPs)
chr2 (66-261)||(43694891-43695086)
chr2 (136-262)||(44002644-44002770)
chr2 (191-262)||(37551610-37551681)
chr2 (136-262)||(19860250-19860376)
chr2 (191-259)||(37640739-37640807)
chr2 (223-262)||(7473602-7473641)
chr2 (191-261)||(33598091-33598161)
chr2 (193-262)||(3739023-3739092)
chr2 (221-262)||(17480896-17480937)
chr2 (221-262)||(35458160-35458201)
chr2 (193-262)||(37996772-37996841)
chr2 (221-262)||(43342252-43342293)
[»] chr3 (20 HSPs)
chr3 (91-261)||(28883642-28883812)
chr3 (67-247)||(44328587-44328767)
chr3 (136-262)||(44610799-44610925)
chr3 (136-262)||(45489086-45489212)
chr3 (136-262)||(50392795-50392921)
chr3 (136-246)||(30809806-30809916)
chr3 (191-262)||(40237351-40237422)
chr3 (193-262)||(42074446-42074515)
chr3 (200-260)||(48181130-48181190)
chr3 (191-262)||(11263743-11263814)
chr3 (191-262)||(45150650-45150721)
chr3 (193-262)||(28182424-28182493)
chr3 (193-262)||(51229781-51229850)
chr3 (191-262)||(51407516-51407587)
chr3 (191-261)||(21985418-21985488)
chr3 (66-99)||(28883581-28883614)
chr3 (222-262)||(39251559-39251599)
chr3 (193-262)||(33025773-33025842)
chr3 (221-262)||(48254479-48254520)
chr3 (193-262)||(53687352-53687421)
[»] chr6 (5 HSPs)
chr6 (68-262)||(30134075-30134270)
chr6 (67-234)||(27824956-27825119)
chr6 (191-262)||(4146864-4146934)
chr6 (136-262)||(20838470-20838596)
chr6 (221-262)||(10683249-10683290)
[»] chr7 (18 HSPs)
chr7 (67-262)||(32450679-32450874)
chr7 (176-262)||(39857114-39857200)
chr7 (191-262)||(2000144-2000214)
chr7 (136-245)||(19544536-19544645)
chr7 (138-262)||(298635-298759)
chr7 (193-262)||(25970487-25970556)
chr7 (206-267)||(45202538-45202599)
chr7 (191-262)||(47085664-47085735)
chr7 (221-267)||(14999950-14999996)
chr7 (221-267)||(26827733-26827779)
chr7 (221-262)||(43664789-43664830)
chr7 (202-254)||(47238952-47239004)
chr7 (140-261)||(47158199-47158323)
chr7 (221-262)||(25472740-25472781)
chr7 (221-262)||(37371161-37371202)
chr7 (189-232)||(25191856-25191899)
chr7 (110-168)||(2000218-2000276)
chr7 (200-262)||(30825251-30825313)
[»] chr8 (15 HSPs)
chr8 (120-262)||(3590055-3590197)
chr8 (136-262)||(2025510-2025636)
chr8 (193-262)||(13015733-13015802)
chr8 (200-256)||(38023008-38023064)
chr8 (156-243)||(7636459-7636546)
chr8 (203-262)||(35802319-35802378)
chr8 (193-262)||(924155-924224)
chr8 (191-262)||(35164356-35164427)
chr8 (191-262)||(37684176-37684247)
chr8 (67-149)||(13015641-13015723)
chr8 (221-262)||(33165873-33165915)
chr8 (221-262)||(8416744-8416785)
chr8 (221-262)||(45276378-45276419)
chr8 (223-262)||(36821602-36821641)
chr8 (221-262)||(22936545-22936586)
[»] chr4 (18 HSPs)
chr4 (101-262)||(16203069-16203231)
chr4 (136-262)||(39732807-39732933)
chr4 (138-262)||(50523846-50523970)
chr4 (137-262)||(5937818-5937943)
chr4 (191-262)||(28911633-28911704)
chr4 (191-262)||(26457163-26457234)
chr4 (191-262)||(51677154-51677225)
chr4 (191-261)||(8503820-8503890)
chr4 (193-262)||(53404086-53404155)
chr4 (191-262)||(22606335-22606406)
chr4 (193-262)||(53663610-53663679)
chr4 (223-262)||(38767875-38767914)
chr4 (225-267)||(48407038-48407080)
chr4 (221-262)||(30418372-30418413)
chr4 (221-262)||(49723865-49723906)
chr4 (221-262)||(28963843-28963884)
chr4 (221-262)||(29386011-29386052)
chr4 (221-261)||(45105888-45105928)
[»] chr5 (13 HSPs)
chr5 (136-262)||(40979416-40979542)
chr5 (136-262)||(10900129-10900255)
chr5 (191-262)||(2526336-2526406)
chr5 (139-262)||(19375381-19375504)
chr5 (120-262)||(33387671-33387812)
chr5 (109-262)||(33082881-33083034)
chr5 (191-262)||(53642-53713)
chr5 (194-262)||(25256789-25256857)
chr5 (194-262)||(25320580-25320648)
chr5 (191-261)||(29367434-29367504)
chr5 (191-262)||(41040111-41040182)
chr5 (221-267)||(19356583-19356629)
chr5 (221-262)||(41742197-41742238)
[»] scaffold0184 (1 HSPs)
scaffold0184 (136-267)||(9664-9795)
[»] scaffold0702 (1 HSPs)
scaffold0702 (191-261)||(4540-4610)
[»] scaffold0662 (1 HSPs)
scaffold0662 (191-261)||(3488-3558)
[»] scaffold0097 (1 HSPs)
scaffold0097 (221-262)||(33037-33078)
[»] scaffold0068 (1 HSPs)
scaffold0068 (221-262)||(37777-37818)


Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 10 - 264
Target Start/End: Complemental strand, 31100688 - 31100439
Alignment:
Q  10 acatcatcactcatagtcatatctgaattatgtcttgagataatccatctaattagctgtttggttcagcttattccaagaccagaagcaattctagagc 109  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  31100688 acatcaacactcatagtcatatctgaattatgtcttgagataatccatctaattagctgtttggttcagcttattccaagaccagaagcaattctagagg 31100589  T
Q  110 ctcaaaattgaaaaaggcaatttttcacatgtttggttcaacttaacaaaagcaattctcttctgtaaaagtaataccggctgaagctagaattcctagc 209  Q
    ||||||||||||||||||||||||||||||     ||||||||| ||||||||||||||||| |||||||||||| | ||||||||||| ||||||||||    
T  31100588 ctcaaaattgaaaaaggcaatttttcacat-----gttcaactttacaaaagcaattctcttatgtaaaagtaattctggctgaagctacaattcctagc 31100494  T
Q  210 ttttgagttaactagaatcaattctccattaaattttatattttgattattacta 264  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31100493 ttttgagttaactagaatcaattctccattaaattttatattttgattattacta 31100439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 67 - 258
Target Start/End: Original strand, 27064953 - 27065144
Alignment:
Q  67 tgtttggttcagcttattccaagaccagaagcaattctagagcctcaaaattgaaaaaggcaatttttcacatgtttggttcaacttaacaaaagcaatt 166  Q
    |||||||||| |||||||   || | |||||||||||||||||   | | || ||||||||||||||| |||||||||||||| ||| | ||||||||||    
T  27064953 tgtttggttcggcttatttttagtctagaagcaattctagagctggagatttaaaaaaggcaatttttgacatgtttggttcagctttataaaagcaatt 27065052  T
Q  167 ctcttctgtaaaagtaataccggctgaagctagaattcctagcttttgagttaactagaatcaattctccattaaattttatattttgatta 258  Q
    |||||||  |||||  ||   | ||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  27065053 ctcttcttcaaaagcgattttgactgaagctacaattcctagtttttgagttaactaaaatcaattctccattaaattttatattttaatta 27065144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 136 - 262
Target Start/End: Original strand, 24075519 - 24075645
Alignment:
Q  136 acatgtttggttcaacttaacaaaagcaattctcttctgtaaaagtaataccggctgaagctagaattcctagcttttgagttaactagaatcaattctc 235  Q
    ||||||||||||||||||   |||| | |||||| |||  ||||||||| | || | |||||| |||||||| ||||||| |||||||||||||||||||    
T  24075519 acatgtttggttcaactttttaaaatcgattctcatcttcaaaagtaattctggataaagctacaattcctaacttttgatttaactagaatcaattctc 24075618  T
Q  236 cattaaattttatattttgattattac 262  Q
    || ||||||||||||||||||||||||    
T  24075619 caataaattttatattttgattattac 24075645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 191 - 262
Target Start/End: Complemental strand, 3850911 - 3850840
Alignment:
Q  191 tgaagctagaattcctagcttttgagttaactagaatcaattctccattaaattttatattttgattattac 262  Q
    |||||||| |||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  3850911 tgaagctacaatttctagcttttgagttatctagaatcaattctccaataaattttatattttgattattac 3850840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 191 - 262
Target Start/End: Complemental strand, 42137747 - 42137676
Alignment:
Q  191 tgaagctagaattcctagcttttgagttaactagaatcaattctccattaaattttatattttgattattac 262  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  42137747 tgaatctacaattcctagcttttgagttaactagaatcaattctccaataaattttatatttttattattac 42137676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 191 - 262
Target Start/End: Complemental strand, 11051208 - 11051137
Alignment:
Q  191 tgaagctagaattcctagcttttgagttaactagaatcaattctccattaaattttatattttgattattac 262  Q
    |||| ||| |||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  11051208 tgaatctacaattcctaacttttgggtaaactagaatcaattctccattaaattttatattttgattattac 11051137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 191 - 262
Target Start/End: Original strand, 11829129 - 11829200
Alignment:
Q  191 tgaagctagaattcctagcttttgagttaactagaatcaattctccattaaattttatattttgattattac 262  Q
    ||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  11829129 tgaaggtataattcctaacttttgagttaactagaatcaattctccattaaattttatattttagttattac 11829200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 191 - 262
Target Start/End: Original strand, 41512196 - 41512267
Alignment:
Q  191 tgaagctagaattcctagcttttgagttaactagaatcaattctccattaaattttatattttgattattac 262  Q
    |||||||| |||||||| ||||||||||| ||| ||||| ||||||| ||||||||||||||||||||||||    
T  41512196 tgaagctacaattcctaacttttgagttagctataatcatttctccaataaattttatattttgattattac 41512267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 209 - 262
Target Start/End: Complemental strand, 46033705 - 46033652
Alignment:
Q  209 cttttgagttaactagaatcaattctccattaaattttatattttgattattac 262  Q
    |||||||||||| |||||||||||||||| |||||| |||||||||||||||||    
T  46033705 cttttgagttaattagaatcaattctccaataaattgtatattttgattattac 46033652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 262
Target Start/End: Original strand, 1762270 - 1762341
Alignment:
Q  191 tgaagctagaattcctagcttttgagttaactagaatcaattctccattaaattttatattttgattattac 262  Q
    |||||||| |||||||| ||||| |||| |||||||||||||||| ||||||||||||| ||| ||| ||||    
T  1762270 tgaagctacaattcctaacttttaagtttactagaatcaattctctattaaattttataatttaatttttac 1762341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 261
Target Start/End: Complemental strand, 11051108 - 11051073
Alignment:
Q  226 atcaattctccattaaattttatattttgattatta 261  Q
    ||||||||||||||||||||||||||||||||||||    
T  11051108 atcaattctccattaaattttatattttgattatta 11051073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 221 - 262
Target Start/End: Complemental strand, 13509956 - 13509915
Alignment:
Q  221 ctagaatcaattctccattaaattttatattttgattattac 262  Q
    |||||||||||||| ||||||||||| |||||||||||||||    
T  13509956 ctagaatcaattctacattaaattttctattttgattattac 13509915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 262
Target Start/End: Original strand, 49430700 - 49430756
Alignment:
Q  206 tagcttttgagttaactagaatcaattctccattaaattttatattttgattattac 262  Q
    |||||||||  |||| |||| ||||||||||| ||||||||||||||| ||||||||    
T  49430700 tagcttttggattaattagattcaattctccaataaattttatatttttattattac 49430756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 200 - 267
Target Start/End: Original strand, 27416626 - 27416692
Alignment:
Q  200 aattcctagcttttgagttaactagaatcaattctccattaaattttatattttgattattactatct 267  Q
    ||||| ||| ||||| |||||||| ||||||||||||| ||| ||||||| |||||||||||| ||||    
T  27416626 aattcttagtttttgggttaactataatcaattctccaataacttttata-tttgattattacaatct 27416692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 262
Target Start/End: Original strand, 7385307 - 7385348
Alignment:
Q  221 ctagaatcaattctccattaaattttatattttgattattac 262  Q
    |||||||||||| | ||||||||||| |||||||||||||||    
T  7385307 ctagaatcaattttacattaaattttttattttgattattac 7385348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 262
Target Start/End: Complemental strand, 47655904 - 47655863
Alignment:
Q  221 ctagaatcaattctccattaaattttatattttgattattac 262  Q
    |||||||||||||| ||||||||||| |||||||| ||||||    
T  47655904 ctagaatcaattctacattaaattttctattttgactattac 47655863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 262
Target Start/End: Original strand, 44740228 - 44740268
Alignment:
Q  222 tagaatcaattctccattaaattttatattttgattattac 262  Q
    ||||||||||||| | |||||||||||||||| ||||||||    
T  44740228 tagaatcaattctacgttaaattttatattttcattattac 44740268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 156; Significance: 6e-83; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 66 - 261
Target Start/End: Original strand, 43694891 - 43695086
Alignment:
Q  66 ctgtttggttcagcttattccaagaccagaagcaattctagagcctcaaaattgaaaaaggcaatttttcacatgtttggttcaacttaacaaaagcaat 165  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||    
T  43694891 ctgtttggttcagcttattccaagacccgaagcaattctagagcctcaaaattgaaaaaggcaatttctcacatgtttggttcagctttacaaaagcaat 43694990  T
Q  166 tctcttctgtaaaagtaataccggctgaagctagaattcctagcttttgagttaactagaatcaattctccattaaattttatattttgattatta 261  Q
    ||||||||||||||  ||| | ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43694991 tctcttctgtaaaaacaattctggctgaagctacaattcctaacttttgagttaactagaatcaattctccattaaattttatattttgattatta 43695086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 136 - 262
Target Start/End: Original strand, 44002644 - 44002770
Alignment:
Q  136 acatgtttggttcaacttaacaaaagcaattctcttctgtaaaagtaataccggctgaagctagaattcctagcttttgagttaactagaatcaattctc 235  Q
    |||||||||||||| |||  ||||| |||||||| ||| |||||| ||| | || |||||||| |||||||||||||||||||| |||||||||||||||    
T  44002644 acatgtttggttcagcttctcaaaatcaattctcatctctaaaagcaattctggatgaagctacaattcctagcttttgagttagctagaatcaattctc 44002743  T
Q  236 cattaaattttatattttgattattac 262  Q
    || ||||||||||||||||||||||||    
T  44002744 caataaattttatattttgattattac 44002770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 191 - 262
Target Start/End: Original strand, 37551610 - 37551681
Alignment:
Q  191 tgaagctagaattcctagcttttgagttaactagaatcaattctccattaaattttatattttgattattac 262  Q
    |||||||| ||||||||| || ||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  37551610 tgaagctacaattcctagtttctgagttaactagaatcaattctccaataaattttgtattttgattattac 37551681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 136 - 262
Target Start/End: Original strand, 19860250 - 19860376
Alignment:
Q  136 acatgtttggttcaacttaacaaaagcaattctcttctgtaaaagtaataccggctgaagctagaattcctagcttttgagttaactagaatcaattctc 235  Q
    |||||||||||| |||||  ||||| |||||||| ||| |||||| |||    | ||||| || ||||| || ||||||||||||||| |||||||||||    
T  19860250 acatgtttggtttaacttctcaaaatcaattctcatctctaaaagcaattttaggtgaagttacaattcttaacttttgagttaactataatcaattctc 19860349  T
Q  236 cattaaattttatattttgattattac 262  Q
    || |||| |||||||||||||||||||    
T  19860350 caataaaatttatattttgattattac 19860376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 191 - 259
Target Start/End: Complemental strand, 37640807 - 37640739
Alignment:
Q  191 tgaagctagaattcctagcttttgagttaactagaatcaattctccattaaattttatattttgattat 259  Q
    |||||||| || || |||||||||  ||  |||||||||||||| ||||||||||||||||||||||||    
T  37640807 tgaagctacaaatcttagcttttggctttcctagaatcaattctacattaaattttatattttgattat 37640739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 262
Target Start/End: Original strand, 7473602 - 7473641
Alignment:
Q  223 agaatcaattctccattaaattttatattttgattattac 262  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  7473602 agaatcaattctacattaaattttatattttgattattac 7473641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 261
Target Start/End: Complemental strand, 33598161 - 33598091
Alignment:
Q  191 tgaagctagaattcctagcttttgagttaactagaatcaattctccattaaattttatattttgattatta 261  Q
    ||||||||| | ||||||||||||||||   ||||||||||||| |||| ||||||||| |||| ||||||    
T  33598161 tgaagctaggaatcctagcttttgagtttggtagaatcaattctacatttaattttatactttggttatta 33598091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 262
Target Start/End: Complemental strand, 3739092 - 3739023
Alignment:
Q  193 aagctagaattcctagcttttgagttaactagaatcaattctccattaaattttatattttgattattac 262  Q
    |||||| ||||||||  |||||| ||   ||||||||||||| |||||||||| ||||||||||||||||    
T  3739092 aagctacaattcctaatttttgactttcttagaatcaattctacattaaatttaatattttgattattac 3739023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 221 - 262
Target Start/End: Original strand, 17480896 - 17480937
Alignment:
Q  221 ctagaatcaattctccattaaattttatattttgattattac 262  Q
    |||||||||||||| ||||||||||| |||||||||||||||    
T  17480896 ctagaatcaattctacattaaattttctattttgattattac 17480937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 221 - 262
Target Start/End: Complemental strand, 35458201 - 35458160
Alignment:
Q  221 ctagaatcaattctccattaaattttatattttgattattac 262  Q
    |||||||||||||| ||||||||||| |||||||||||||||    
T  35458201 ctagaatcaattctacattaaattttctattttgattattac 35458160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 262
Target Start/End: Original strand, 37996772 - 37996841
Alignment:
Q  193 aagctagaattcctagcttttgagttaactagaatcaattctccattaaattttatattttgattattac 262  Q
    |||||| |||||||| ||||||  ||  || ||||||||||| ||||||||||||||| |||||||||||    
T  37996772 aagctacaattcctaacttttggctttccttgaatcaattctacattaaattttatatcttgattattac 37996841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 221 - 262
Target Start/End: Complemental strand, 43342293 - 43342252
Alignment:
Q  221 ctagaatcaattctccattaaattttatattttgattattac 262  Q
    |||||||||||||| ||||||||||| |||||||||||||||    
T  43342293 ctagaatcaattctacattaaattttctattttgattattac 43342252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 91 - 261
Target Start/End: Original strand, 28883642 - 28883812
Alignment:
Q  91 ccagaagcaattctagagcctcaaaattgaaaaaggcaatttttcacatgtttggttcaacttaacaaaagcaattctcttctgtaaaagtaataccggc 190  Q
    ||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||| ||| |||||| |||||||||| |||||||| ||| | | |    
T  28883642 ccagaagcaattctagagcctgaaaattgaaaaaggcaatttcttacatgtttggttcagctttacaaaaacaattctcttttgtaaaagcaattctgac 28883741  T
Q  191 tgaagctagaattcctagcttttgagttaactagaatcaattctccattaaattttatattttgattatta 261  Q
    |||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  28883742 tgaagctacaattcttagcttttgagttaaatagaatcaattctccattaaattttatattttgattatta 28883812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 67 - 247
Target Start/End: Original strand, 44328587 - 44328767
Alignment:
Q  67 tgtttggttcagcttattccaagaccagaagcaattctagagcctcaaaattgaaaaaggcaatttttcacatgtttggttcaacttaacaaaagcaatt 166  Q
    ||||||||||| ||||||   || | ||||||||||||| ||| | | ||||||||||| |||||||| |||||||||||||| ||| || | |||||||    
T  44328587 tgtttggttcaacttatttttagtctagaagcaattctaaagcttgagaattgaaaaagacaatttttgacatgtttggttcagctttactagagcaatt 44328686  T
Q  167 ctcttctgtaaaagtaataccggctgaagctagaattcctagcttttgagttaactagaatcaattctccattaaatttta 247  Q
    |||||||  ||||| |||   ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  44328687 ctcttctccaaaagcaattttggctgaagctacaattcctagcttttgagttaactagaatcaattctccattatatttta 44328767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 136 - 262
Target Start/End: Complemental strand, 44610925 - 44610799
Alignment:
Q  136 acatgtttggttcaacttaacaaaagcaattctcttctgtaaaagtaataccggctgaagctagaattcctagcttttgagttaactagaatcaattctc 235  Q
    |||||||||||||| ||| |||||| |||||||| |||  ||||| ||| | || |||||||| |||| |||||||||||||| | ||||||||||||||    
T  44610925 acatgtttggttcagcttcacaaaatcaattctcatctccaaaagcaattctggttgaagctacaatttctagcttttgagtttattagaatcaattctc 44610826  T
Q  236 cattaaattttatattttgattattac 262  Q
    |||||||||||||||||| ||||||||    
T  44610825 cattaaattttatattttaattattac 44610799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 136 - 262
Target Start/End: Complemental strand, 45489212 - 45489086
Alignment:
Q  136 acatgtttggttcaacttaacaaaagcaattctcttctgtaaaagtaataccggctgaagctagaattcctagcttttgagttaactagaatcaattctc 235  Q
    |||||||||||| |||||  ||||| |||||||| ||| |||||| ||| |  | |||||||| |||||||| |||| ||||||||||||||||||| ||    
T  45489212 acatgtttggtttaacttctcaaaatcaattctcatctctaaaagcaattctaggtgaagctacaattcctaactttggagttaactagaatcaattttc 45489113  T
Q  236 cattaaattttatattttgattattac 262  Q
    || |||| |||||||||||||||||||    
T  45489112 caataaaatttatattttgattattac 45489086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 136 - 262
Target Start/End: Complemental strand, 50392921 - 50392795
Alignment:
Q  136 acatgtttggttcaacttaacaaaagcaattctcttctgtaaaagtaataccggctgaagctagaattcctagcttttgagttaactagaatcaattctc 235  Q
    ||||||||||||||||||  ||||| |||||||| |||  ||||||||| | || |||| ||| |||||||||||||| ||||| ||||||| |||||||    
T  50392921 acatgtttggttcaacttctcaaaatcaattctcatctccaaaagtaattctggatgaaactacaattcctagcttttaagttagctagaataaattctc 50392822  T
Q  236 cattaaattttatattttgattattac 262  Q
     | ||||||||||||||| ||||||||    
T  50392821 taataaattttatatttttattattac 50392795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 136 - 246
Target Start/End: Original strand, 30809806 - 30809916
Alignment:
Q  136 acatgtttggttcaacttaacaaaagcaattctcttctgtaaaagtaataccggctgaagctagaattcctagcttttgagttaactagaatcaattctc 235  Q
    |||||||||||||| |||  ||||| ||| |||| |||  ||||| ||| | || |||||||| |||||||||||||||||||| |||||||||||||||    
T  30809806 acatgtttggttcagcttctcaaaatcaactctcatctccaaaagcaattctggatgaagctacaattcctagcttttgagttagctagaatcaattctc 30809905  T
Q  236 cattaaatttt 246  Q
    || ||||||||    
T  30809906 caataaatttt 30809916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 191 - 262
Target Start/End: Original strand, 40237351 - 40237422
Alignment:
Q  191 tgaagctagaattcctagcttttgagttaactagaatcaattctccattaaattttatattttgattattac 262  Q
    ||||| || |||||||| ||||| | |||||||||||||||||||||| |||||||||||||||||||||||    
T  40237351 tgaagttacaattcctaacttttaaattaactagaatcaattctccatcaaattttatattttgattattac 40237422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 193 - 262
Target Start/End: Original strand, 42074446 - 42074515
Alignment:
Q  193 aagctagaattcctagcttttgagttaactagaatcaattctccattaaattttatattttgattattac 262  Q
    |||||| |||||||||||||||| ||  || ||||||||||| |||||||||| ||||||||||||||||    
T  42074446 aagctacaattcctagcttttgactttgctcgaatcaattctacattaaatttaatattttgattattac 42074515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 200 - 260
Target Start/End: Original strand, 48181130 - 48181190
Alignment:
Q  200 aattcctagcttttgagttaactagaatcaattctccattaaattttatattttgattatt 260  Q
    |||||||||||||||  ||  |||||||||||||| |||||||||||||||||||||||||    
T  48181130 aattcctagcttttggctttcctagaatcaattctacattaaattttatattttgattatt 48181190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 262
Target Start/End: Original strand, 11263743 - 11263814
Alignment:
Q  191 tgaagctagaattcctagcttttgagttaactagaatcaattctccattaaattttatattttgattattac 262  Q
    |||||||| || ||||||||||||  ||  ||||||||||||||  ||||||||||||||||||||||||||    
T  11263743 tgaagctacaaatcctagcttttggctttcctagaatcaattctagattaaattttatattttgattattac 11263814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 262
Target Start/End: Original strand, 45150650 - 45150721
Alignment:
Q  191 tgaagctagaattcctagcttttgagttaactagaatcaattctccattaaattttatattttgattattac 262  Q
    |||||||| || ||||||||||||  ||  |||||||||||||| |||||||||||||||||||||| ||||    
T  45150650 tgaagctacaaatcctagcttttggttttcctagaatcaattctacattaaattttatattttgattgttac 45150721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 262
Target Start/End: Original strand, 28182424 - 28182493
Alignment:
Q  193 aagctagaattcctagcttttgagttaactagaatcaattctccattaaattttatattttgattattac 262  Q
    |||||| |||||||| ||||||  ||  ||| |||||||||| |||||||||||||||||||||||||||    
T  28182424 aagctaaaattcctaacttttggctttcctataatcaattctacattaaattttatattttgattattac 28182493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 262
Target Start/End: Original strand, 51229781 - 51229850
Alignment:
Q  193 aagctagaattcctagcttttgagttaactagaatcaattctccattaaattttatattttgattattac 262  Q
    |||||| |||||||| ||||||  ||  |||||||||||||| |||||||||| ||||||||||||||||    
T  51229781 aagctacaattcctaacttttggctttcctagaatcaattctacattaaatttaatattttgattattac 51229850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 262
Target Start/End: Original strand, 51407516 - 51407587
Alignment:
Q  191 tgaagctagaattcctagcttttgagttaactagaatcaattctccattaaattttatattttgattattac 262  Q
    |||||||| |||| |||| ||||  |||||||| ||||||||||||| ||||| ||||||||| ||||||||    
T  51407516 tgaagctacaatttctagttttttggttaactaaaatcaattctccaataaatattatattttaattattac 51407587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 261
Target Start/End: Original strand, 21985418 - 21985488
Alignment:
Q  191 tgaagctagaattcctagcttttgagttaactagaatcaattctccattaaattttatattttgattatta 261  Q
    ||||||||||| ||||| ||||||||||   ||||||||||||| |||| ||||||||| |||| ||||||    
T  21985418 tgaagctagaaatcctaacttttgagtttggtagaatcaattctacatttaattttatactttggttatta 21985488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 99
Target Start/End: Original strand, 28883581 - 28883614
Alignment:
Q  66 ctgtttggttcagcttattccaagaccagaagca 99  Q
    ||||||||||||||||||||||||||||||||||    
T  28883581 ctgtttggttcagcttattccaagaccagaagca 28883614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 262
Target Start/End: Original strand, 39251559 - 39251599
Alignment:
Q  222 tagaatcaattctccattaaattttatattttgattattac 262  Q
    ||||||||||||| ||||||||||| |||||||||||||||    
T  39251559 tagaatcaattctacattaaattttctattttgattattac 39251599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 262
Target Start/End: Complemental strand, 33025842 - 33025773
Alignment:
Q  193 aagctagaattcctagcttttgagttaactagaatcaattctccattaaattttatattttgattattac 262  Q
    |||||| |||||||||||||||  ||  ||| |||||||||| ||| |||||| ||||||| ||||||||    
T  33025842 aagctacaattcctagcttttggctttcctataatcaattctacataaaatttaatattttaattattac 33025773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 262
Target Start/End: Complemental strand, 48254520 - 48254479
Alignment:
Q  221 ctagaatcaattctccattaaattttatattttgattattac 262  Q
    ||||||||||||||  |||||||||| |||||||||||||||    
T  48254520 ctagaatcaattctatattaaattttctattttgattattac 48254479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 262
Target Start/End: Complemental strand, 53687421 - 53687352
Alignment:
Q  193 aagctagaattcctagcttttgagttaactagaatcaattctccattaaattttatattttgattattac 262  Q
    |||||| ||||||||| |||||  ||  ||| |||||||||| || ||||||| ||||||||||||||||    
T  53687421 aagctacaattcctaggttttggcttttctaaaatcaattctacactaaatttaatattttgattattac 53687352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 108; Significance: 3e-54; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 68 - 262
Target Start/End: Original strand, 30134075 - 30134270
Alignment:
Q  68 gtttggttcagcttattccaagaccagaagcaattctagagcctcaaaattgaaaaag-gcaatttttcacatgtttggttcaacttaacaaaagcaatt 166  Q
    |||||||||||||| |||| || |||||| || ||||| ||||||||||||||||||  ||||||| |||||||||||||||| ||| ||||||||||||    
T  30134075 gtttggttcagctttttcctagtccagaatcacttctacagcctcaaaattgaaaaaaagcaatttgtcacatgtttggttcagctttacaaaagcaatt 30134174  T
Q  167 ctcttctgtaaaagtaataccggctgaagctagaattcctagcttttgagttaactagaatcaattctccattaaattttatattttgattattac 262  Q
    |||||||  ||||| ||| | || |||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  30134175 ctcttctccaaaagcaattctggttgaagctacaatttctagcttttgagttaaccagaatcaattctccattaaattttatattttaattattac 30134270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 67 - 234
Target Start/End: Original strand, 27824956 - 27825119
Alignment:
Q  67 tgtttggttcagcttattccaagaccagaagcaattctagagcctcaaaattgaaaaaggcaatttttcacatgtttggttcaacttaacaaaagcaatt 166  Q
    ||||||||||||||||||   || ||||||||||||||||||| | | ||||||||||||||||| || |||||||||||||| ||    ||||||||||    
T  27824956 tgtttggttcagcttattattagtccagaagcaattctagagcttgagaattgaaaaaggcaattgttgacatgtttggttcagct----aaaagcaatt 27825051  T
Q  167 ctcttctgtaaaagtaataccggctgaagctagaattcctagcttttgagttaactagaatcaattct 234  Q
    |||||||  ||||| |||   || |||||||| |||||||| ||||| ||||||||||||||||||||    
T  27825052 ctcttctccaaaagcaattatggttgaagctacaattcctaacttttcagttaactagaatcaattct 27825119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 191 - 262
Target Start/End: Original strand, 4146864 - 4146934
Alignment:
Q  191 tgaagctagaattcctagcttttgagttaactagaatcaattctccattaaattttatattttgattattac 262  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  4146864 tgaagctacaattcctagcttttgagttaactagaatcaattctccatt-aattttatattttgattattac 4146934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 136 - 262
Target Start/End: Complemental strand, 20838596 - 20838470
Alignment:
Q  136 acatgtttggttcaacttaacaaaagcaattctcttctgtaaaagtaataccggctgaagctagaattcctagcttttgagttaactagaatcaattctc 235  Q
    |||||||||||||| |||  ||||| |||||||| |||  ||||| ||| | || |||||||| || ||||| |||||||||| |||| |||||||||||    
T  20838596 acatgtttggttcagcttctcaaaatcaattctcatctccaaaagcaattctggttgaagctacaaatcctaacttttgagtttactataatcaattctc 20838497  T
Q  236 cattaaattttatattttgattattac 262  Q
    || ||||| ||||||||||||||||||    
T  20838496 caataaatcttatattttgattattac 20838470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 221 - 262
Target Start/End: Original strand, 10683249 - 10683290
Alignment:
Q  221 ctagaatcaattctccattaaattttatattttgattattac 262  Q
    |||||||||||||| ||||||||||| |||||||||||||||    
T  10683249 ctagaatcaattctacattaaattttctattttgattattac 10683290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 67 - 262
Target Start/End: Original strand, 32450679 - 32450874
Alignment:
Q  67 tgtttggttcagcttattccaagaccagaagcaattctagagcctcaaaattgaaaaaggcaatttttcacatgtttggttcaacttaacaaaagcaatt 166  Q
    ||||||||||||||| |||  || |||||||||||| |||||| ||| |||| ||||| ||||||| | | |||||||||||||||| ||||||||||||    
T  32450679 tgtttggttcagcttcttcttagtccagaagcaattttagagcttcagaatttaaaaaagcaatttcttatatgtttggttcaactttacaaaagcaatt 32450778  T
Q  167 ctcttctgtaaaagtaataccggctgaagctagaattcctagcttttgagttaactagaatcaattctccattaaattttatattttgattattac 262  Q
    |||||||  ||||| |||   || |||||||| |||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  32450779 ctcttctccaaaagcaattttggttgaagctacaatttctaacttttgagttaactagaatcaattctccaataaattttatattttgattattac 32450874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 176 - 262
Target Start/End: Original strand, 39857114 - 39857200
Alignment:
Q  176 aaaagtaataccggctgaagctagaattcctagcttttgagttaactagaatcaattctccattaaattttatattttgattattac 262  Q
    ||||||||| | || |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39857114 aaaagtaattctggatgaagctacaattcatagcttttgagttaactagaatcaattctccattaaattttatattttgattattac 39857200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 191 - 262
Target Start/End: Complemental strand, 2000214 - 2000144
Alignment:
Q  191 tgaagctagaattcctagcttttgagttaactagaatcaattctccattaaattttatattttgattattac 262  Q
    |||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  2000214 tgaagctacaattcctaccttttgagttaactagaatcaattctccattaaa-tttatattttgattattac 2000144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 136 - 245
Target Start/End: Original strand, 19544536 - 19544645
Alignment:
Q  136 acatgtttggttcaacttaacaaaagcaattctcttctgtaaaagtaataccggctgaagctagaattcctagcttttgagttaactagaatcaattctc 235  Q
    |||||||||||||| |||  ||||| |||||||| |||  |||||||||   || |||||||| ||||| ||||||||||||| ||||||||||||||||    
T  19544536 acatgtttggttcagcttctcaaaatcaattctcatctccaaaagtaattatggttgaagctacaattcatagcttttgagtttactagaatcaattctc 19544635  T
Q  236 cattaaattt 245  Q
    ||||||||||    
T  19544636 cattaaattt 19544645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 138 - 262
Target Start/End: Complemental strand, 298759 - 298635
Alignment:
Q  138 atgtttggttcaacttaacaaaagcaattctcttctgtaaaagtaataccggctgaagctagaattcctagcttttgagttaactagaatcaattctcca 237  Q
    |||||||||||| |||  ||||| |||||||| | | |||||| |||   |  |||||||| ||||| |||||||| |||| ||||||||||||||||||    
T  298759 atgtttggttcagcttctcaaaatcaattctcatttctaaaagcaattttgattgaagctacaattcttagcttttaagtttactagaatcaattctcca 298660  T
Q  238 ttaaattttatattttgattattac 262  Q
    |||||||||||||||| ||||||||    
T  298659 ttaaattttatattttaattattac 298635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 193 - 262
Target Start/End: Original strand, 25970487 - 25970556
Alignment:
Q  193 aagctagaattcctagcttttgagttaactagaatcaattctccattaaattttatattttgattattac 262  Q
    |||||| |||||||||||||||  ||   ||||||||||||| |||||||||||||||||||||||||||    
T  25970487 aagctacaattcctagcttttggctttcttagaatcaattctacattaaattttatattttgattattac 25970556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 206 - 267
Target Start/End: Original strand, 45202538 - 45202599
Alignment:
Q  206 tagcttttgagttaactagaatcaattctccattaaattttatattttgattattactatct 267  Q
    ||||||||  |||||||||||||||||||||| ||||||||||||||| |||||||| ||||    
T  45202538 tagcttttaggttaactagaatcaattctccaataaattttatattttaattattacaatct 45202599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 262
Target Start/End: Complemental strand, 47085735 - 47085664
Alignment:
Q  191 tgaagctagaattcctagcttttgagttaactagaatcaattctccattaaattttatattttgattattac 262  Q
    ||||| || |||||||| |||||||||| |||||||| ||||||||||| || |||||||||| ||||||||    
T  47085735 tgaagttacaattcctaacttttgagtttactagaattaattctccattgaaatttatattttaattattac 47085664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 221 - 267
Target Start/End: Original strand, 14999950 - 14999996
Alignment:
Q  221 ctagaatcaattctccattaaattttatattttgattattactatct 267  Q
    |||||||||||||| ||||||||||||||||||||||||||| ||||    
T  14999950 ctagaatcaattctacattaaattttatattttgattattacaatct 14999996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 221 - 267
Target Start/End: Complemental strand, 26827779 - 26827733
Alignment:
Q  221 ctagaatcaattctccattaaattttatattttgattattactatct 267  Q
    |||||||||||||| ||||||||||||||||||||||||||| ||||    
T  26827779 ctagaatcaattctacattaaattttatattttgattattacaatct 26827733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 221 - 262
Target Start/End: Complemental strand, 43664830 - 43664789
Alignment:
Q  221 ctagaatcaattctccattaaattttatattttgattattac 262  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  43664830 ctagaatcaattctacattaaattttatattttgattattac 43664789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 202 - 254
Target Start/End: Complemental strand, 47239004 - 47238952
Alignment:
Q  202 ttcctagcttttgagttaactagaatcaattctccattaaattttatattttg 254  Q
    |||||| |||||||||||  ||||||||||||| |||||||||||||||||||    
T  47239004 ttcctaacttttgagttagttagaatcaattctgcattaaattttatattttg 47238952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 261
Target Start/End: Complemental strand, 47158323 - 47158199
Alignment:
Q  140 gtttggttcaacttaacaaaagcaattctcttctgtaaaagtaataccggctgaagctagaattcctagcttttgagttaactag---aatcaattctcc 236  Q
    |||||||| |||||  ||||| |||||||| |||  ||||| |||   || |||||||| ||||| || ||||||| |||| ||    ||||||||||||    
T  47158323 gtttggtttaacttctcaaaatcaattctcatctccaaaagcaattttgggtgaagctacaattcataacttttgaattaaatattataatcaattctcc 47158224  T
Q  237 attaaattttatattttgattatta 261  Q
    ||||||||||||||||| |||||||    
T  47158223 attaaattttatatttttattatta 47158199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 221 - 262
Target Start/End: Complemental strand, 25472781 - 25472740
Alignment:
Q  221 ctagaatcaattctccattaaattttatattttgattattac 262  Q
    |||||||||||||| ||||||||||| |||||||||||||||    
T  25472781 ctagaatcaattctacattaaattttctattttgattattac 25472740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 221 - 262
Target Start/End: Original strand, 37371161 - 37371202
Alignment:
Q  221 ctagaatcaattctccattaaattttatattttgattattac 262  Q
    |||||||||||||| ||||||||||| |||||||||||||||    
T  37371161 ctagaatcaattctacattaaattttctattttgattattac 37371202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 232
Target Start/End: Complemental strand, 25191899 - 25191856
Alignment:
Q  189 gctgaagctagaattcctagcttttgagttaactagaatcaatt 232  Q
    ||||||| || |||| ||||||||||||||||||||||||||||    
T  25191899 gctgaagttataatttctagcttttgagttaactagaatcaatt 25191856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 168
Target Start/End: Complemental strand, 2000276 - 2000218
Alignment:
Q  110 ctcaaaattgaaaaaggcaatttttcacatgtttggttcaacttaacaaaagcaattct 168  Q
    |||| |||||||||| ||||||| | ||| |||||||||||||| |||||| |||||||    
T  2000276 ctcataattgaaaaaagcaatttcttacaggtttggttcaactttacaaaaacaattct 2000218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 262
Target Start/End: Original strand, 30825251 - 30825313
Alignment:
Q  200 aattcctagcttttgagttaactagaatcaattctccattaaattttatattttgattattac 262  Q
    |||||||||||||||  ||  | |||||||||||| |||||||||| ||||||| ||||||||    
T  30825251 aattcctagcttttggctttccaagaatcaattctacattaaatttaatattttaattattac 30825313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 120 - 262
Target Start/End: Original strand, 3590055 - 3590197
Alignment:
Q  120 aaaaaggcaatttttcacatgtttggttcaacttaacaaaagcaattctcttctgtaaaagtaataccggctgaagctagaattcctagcttttgagtta 219  Q
    ||||| ||||||| |||||||||||||||| ||| ||| |||||||||||||||  ||||  ||| | || |||||||| |||||||| |||||||||||    
T  3590055 aaaaaagcaatttgtcacatgtttggttcagctttacagaagcaattctcttctccaaaaacaattctggttgaagctacaattcctaacttttgagtta 3590154  T
Q  220 actagaatcaattctccattaaattttatattttgattattac 262  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  3590155 actagaatcaattctccattaaattttatattttaattattac 3590197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 136 - 262
Target Start/End: Original strand, 2025510 - 2025636
Alignment:
Q  136 acatgtttggttcaacttaacaaaagcaattctcttctgtaaaagtaataccggctgaagctagaattcctagcttttgagttaactagaatcaattctc 235  Q
    |||||||||||||| |||  ||||| |||||||| |||  ||||| |||   || |||||||| ||||||||| |||||||||| |||||||||||||||    
T  2025510 acatgtttggttcagcttctcaaaatcaattctcatctccaaaagcaattttggatgaagctacaattcctagtttttgagttagctagaatcaattctc 2025609  T
Q  236 cattaaattttatattttgattattac 262  Q
    || || |||||||||||||||||||||    
T  2025610 caatatattttatattttgattattac 2025636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 193 - 262
Target Start/End: Original strand, 13015733 - 13015802
Alignment:
Q  193 aagctagaattcctagcttttgagttaactagaatcaattctccattaaattttatattttgattattac 262  Q
    |||||| |||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  13015733 aagctacaattcctaacttttgagttaacgagaatcaattctacattaaattttatattttgattattac 13015802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 200 - 256
Target Start/End: Original strand, 38023008 - 38023064
Alignment:
Q  200 aattcctagcttttgagttaactagaatcaattctccattaaattttatattttgat 256  Q
    ||||| || ||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  38023008 aattcttaccttttaagttaactagaatcaattctccattaaatcttatattttgat 38023064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 243
Target Start/End: Original strand, 7636459 - 7636546
Alignment:
Q  156 caaaagcaattctcttctgtaaaagtaataccggctgaagctagaattcctagcttttgagttaactagaatcaattctccattaaat 243  Q
    ||||| |||||||| ||| |||||| ||| |  | |||||||| ||||||||| ||||||||||| || |||||||||||||||||||    
T  7636459 caaaatcaattctcatctctaaaagcaattcttgttgaagctataattcctagattttgagttaagtaaaatcaattctccattaaat 7636546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 262
Target Start/End: Complemental strand, 35802378 - 35802319
Alignment:
Q  203 tcctagcttttgagttaactagaatcaattctccattaaattttatattttgattattac 262  Q
    ||||||||||||  ||  |||||||||||||| |||||||||||||||||||||||||||    
T  35802378 tcctagcttttggctttcctagaatcaattctacattaaattttatattttgattattac 35802319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 262
Target Start/End: Original strand, 924155 - 924224
Alignment:
Q  193 aagctagaattcctagcttttgagttaactagaatcaattctccattaaattttatattttgattattac 262  Q
    |||||| |||||||| ||||||  |||||||||||||||||  || || |||||||||||||||||||||    
T  924155 aagctacaattcctaacttttggtttaactagaatcaattcgtcaatatattttatattttgattattac 924224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 262
Target Start/End: Complemental strand, 35164427 - 35164356
Alignment:
Q  191 tgaagctagaattcctagcttttgagttaactagaatcaattctccattaaattttatattttgattattac 262  Q
    |||||||| ||||||||| |||||| ||  || ||||||||||| |||||||||| ||||||| ||||||||    
T  35164427 tgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattac 35164356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 262
Target Start/End: Complemental strand, 37684247 - 37684176
Alignment:
Q  191 tgaagctagaattcctagcttttgagttaactagaatcaattctccattaaattttatattttgattattac 262  Q
    ||||| || |||||||| |||||||||| |||||||||||| ||  |||||||||| ||||||| |||||||    
T  37684247 tgaagatacaattcctaacttttgagttgactagaatcaatgctggattaaattttgtattttggttattac 37684176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 149
Target Start/End: Original strand, 13015641 - 13015723
Alignment:
Q  67 tgtttggttcagcttattccaagaccagaagcaattctagagcctcaaaattgaaaaaggcaatttttcacatgtttggttca 149  Q
    ||||||||||| ||| ||   || ||||||||| ||||| ||||||| |||||||||| ||||||| | ||||||||||||||    
T  13015641 tgtttggttcaacttctttttagtccagaagcacttctacagcctcagaattgaaaaaagcaatttcttacatgtttggttca 13015723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 262
Target Start/End: Original strand, 33165873 - 33165915
Alignment:
Q  221 ctagaatcaattctccattaaattttata-ttttgattattac 262  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  33165873 ctagaatcaattctccattaaattttatatttttgattattac 33165915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 221 - 262
Target Start/End: Original strand, 8416744 - 8416785
Alignment:
Q  221 ctagaatcaattctccattaaattttatattttgattattac 262  Q
    |||||||||||||| ||||||||||| |||||||||||||||    
T  8416744 ctagaatcaattctacattaaattttctattttgattattac 8416785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 221 - 262
Target Start/End: Complemental strand, 45276419 - 45276378
Alignment:
Q  221 ctagaatcaattctccattaaattttatattttgattattac 262  Q
    |||||||||||||| ||||||||||| |||||||||||||||    
T  45276419 ctagaatcaattctacattaaattttctattttgattattac 45276378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 223 - 262
Target Start/End: Complemental strand, 36821641 - 36821602
Alignment:
Q  223 agaatcaattctccattaaattttatattttgattattac 262  Q
    |||||||||| | |||||||||||||||||||||||||||    
T  36821641 agaatcaattttacattaaattttatattttgattattac 36821602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 262
Target Start/End: Complemental strand, 22936586 - 22936545
Alignment:
Q  221 ctagaatcaattctccattaaattttatattttgattattac 262  Q
    |||||||||||||| ||||||||||| ||||| |||||||||    
T  22936586 ctagaatcaattctacattaaattttctatttcgattattac 22936545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 6e-37; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 101 - 262
Target Start/End: Complemental strand, 16203231 - 16203069
Alignment:
Q  101 ttctagagcctcaaaattgaaaaagg-caatttttcacatgtttggttcaacttaacaaaagcaattctcttctgtaaaagtaataccggctgaagctag 199  Q
    ||||| ||||||| ||||||||||   |||||| |||||||||||||||| ||| ||| | |||||||||||||  ||||| |||   || ||||||||     
T  16203231 ttctacagcctcataattgaaaaaaaacaatttgtcacatgtttggttcagctttacagatgcaattctcttctccaaaagcaattttggttgaagctac 16203132  T
Q  200 aattcctagcttttgagttaactagaatcaattctccattaaattttatattttgattattac 262  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  16203131 aattcctagcttttgagttgactagaatcaattctccattaaattttatattttaattattac 16203069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 136 - 262
Target Start/End: Original strand, 39732807 - 39732933
Alignment:
Q  136 acatgtttggttcaacttaacaaaagcaattctcttctgtaaaagtaataccggctgaagctagaattcctagcttttgagttaactagaatcaattctc 235  Q
    |||||||||||||| |||  ||||| |||||||| |||  ||||| ||| | || |||||||| |||||||||||||||||||| |||||||||||||||    
T  39732807 acatgtttggttcagcttctcaaaatcaattctcatctccaaaagcaattctggatgaagctacaattcctagcttttgagttagctagaatcaattctc 39732906  T
Q  236 cattaaattttatattttgattattac 262  Q
    || ||||||||||||||||||||||||    
T  39732907 caataaattttatattttgattattac 39732933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 138 - 262
Target Start/End: Complemental strand, 50523970 - 50523846
Alignment:
Q  138 atgtttggttcaacttaacaaaagcaattctcttctgtaaaagtaataccggctgaagctagaattcctagcttttgagttaactagaatcaattctcca 237  Q
    ||||||||||||||||  ||||| |||||||| |||  ||||| ||| | || |||||||| |||||||||||||||||||| |||||||||||||||||    
T  50523970 atgtttggttcaacttctcaaaatcaattctcatctccaaaagcaattctggatgaagctacaattcctagcttttgagttagctagaatcaattctcca 50523871  T
Q  238 ttaaattttatattttgattattac 262  Q
     ||||||| ||||||||||||||||    
T  50523870 ataaatttaatattttgattattac 50523846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 137 - 262
Target Start/End: Complemental strand, 5937943 - 5937818
Alignment:
Q  137 catgtttggttcaacttaacaaaagcaattctcttctgtaaaagtaataccggctgaagctagaattcctagcttttgagttaactagaatcaattctcc 236  Q
    ||||||||||||| |||  ||||| |||||||| |||  ||||| |||   || |||||||| |||||||||||||||||||| ||||||||||||||||    
T  5937943 catgtttggttcagcttctcaaaatcaattctcatctccaaaagcaattatggatgaagctacaattcctagcttttgagttagctagaatcaattctcc 5937844  T
Q  237 attaaattttatattttgattattac 262  Q
    | ||||||||||||||||||||||||    
T  5937843 aataaattttatattttgattattac 5937818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 191 - 262
Target Start/End: Original strand, 28911633 - 28911704
Alignment:
Q  191 tgaagctagaattcctagcttttgagttaactagaatcaattctccattaaattttatattttgattattac 262  Q
    |||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  28911633 tgaagctacaattcctaacttttgagttaactaaaatcaattctccattaaattttatattttgattattac 28911704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 191 - 262
Target Start/End: Original strand, 26457163 - 26457234
Alignment:
Q  191 tgaagctagaattcctagcttttgagttaactagaatcaattctccattaaattttatattttgattattac 262  Q
    |||||||| |||| |||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||    
T  26457163 tgaagctacaatttctagcttttgggttaactagaatcaattctccaataaattttatattttaattattac 26457234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 191 - 262
Target Start/End: Original strand, 51677154 - 51677225
Alignment:
Q  191 tgaagctagaattcctagcttttgagttaactagaatcaattctccattaaattttatattttgattattac 262  Q
    |||||||| |||||||| |||||||||| ||||||||||||| |||||||||||||||||||| ||||||||    
T  51677154 tgaagctacaattcctaacttttgagtttactagaatcaattttccattaaattttatattttaattattac 51677225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 191 - 261
Target Start/End: Original strand, 8503820 - 8503890
Alignment:
Q  191 tgaagctagaattcctagcttttgagttaactagaatcaattctccattaaattttatattttgattatta 261  Q
    |||||||| |||||||| |||||| ||||||||||||||||| |||| |||||||||||||||||||||||    
T  8503820 tgaagctacaattcctaacttttgtgttaactagaatcaattttccaataaattttatattttgattatta 8503890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 193 - 262
Target Start/End: Complemental strand, 53404155 - 53404086
Alignment:
Q  193 aagctagaattcctagcttttgagttaactagaatcaattctccattaaattttatattttgattattac 262  Q
    |||||| |||||||||||||||  ||  |||||||||||| | |||||||||||||||||||||||||||    
T  53404155 aagctacaattcctagcttttggttttcctagaatcaattttacattaaattttatattttgattattac 53404086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 262
Target Start/End: Complemental strand, 22606406 - 22606335
Alignment:
Q  191 tgaagctagaattcctagcttttgagttaactagaatcaattctccattaaattttatattttgattattac 262  Q
    |||||||| || ||||||||||||| ||  | ||||||||||||  ||||||||||||||||||||||||||    
T  22606406 tgaagctacaaatcctagcttttgactttccaagaatcaattctatattaaattttatattttgattattac 22606335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 262
Target Start/End: Complemental strand, 53663679 - 53663610
Alignment:
Q  193 aagctagaattcctagcttttgagttaactagaatcaattctccattaaattttatattttgattattac 262  Q
    |||||| |||||||| ||||||  ||  ||| |||||||||| |||||||||||||||||||||||||||    
T  53663679 aagctacaattcctaacttttggctttcctataatcaattctacattaaattttatattttgattattac 53663610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 262
Target Start/End: Original strand, 38767875 - 38767914
Alignment:
Q  223 agaatcaattctccattaaattttatattttgattattac 262  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  38767875 agaatcaattctacattaaattttatattttgattattac 38767914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 267
Target Start/End: Original strand, 48407038 - 48407080
Alignment:
Q  225 aatcaattctccattaaattttatattttgattattactatct 267  Q
    |||||||||| ||||||||||||||||||||||||||| ||||    
T  48407038 aatcaattctacattaaattttatattttgattattacaatct 48407080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 221 - 262
Target Start/End: Complemental strand, 30418413 - 30418372
Alignment:
Q  221 ctagaatcaattctccattaaattttatattttgattattac 262  Q
    |||||||||||||| ||||||||||| |||||||||||||||    
T  30418413 ctagaatcaattctacattaaattttctattttgattattac 30418372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 221 - 262
Target Start/End: Original strand, 49723865 - 49723906
Alignment:
Q  221 ctagaatcaattctccattaaattttatattttgattattac 262  Q
    ||||||||||||||  ||||||||||||||||||||||||||    
T  49723865 ctagaatcaattctatattaaattttatattttgattattac 49723906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 262
Target Start/End: Complemental strand, 28963884 - 28963843
Alignment:
Q  221 ctagaatcaattctccattaaattttatattttgattattac 262  Q
    ||||||||||||||  |||||||||| |||||||||||||||    
T  28963884 ctagaatcaattctatattaaattttctattttgattattac 28963843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 262
Target Start/End: Complemental strand, 29386052 - 29386011
Alignment:
Q  221 ctagaatcaattctccattaaattttatattttgattattac 262  Q
    |||||||||||||| || |||||||| |||||||||||||||    
T  29386052 ctagaatcaattctacaataaattttttattttgattattac 29386011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 261
Target Start/End: Original strand, 45105888 - 45105928
Alignment:
Q  221 ctagaatcaattctccattaaattttatattttgattatta 261  Q
    |||||||||||||| |||| ||||| |||||||||||||||    
T  45105888 ctagaatcaattctacattcaatttaatattttgattatta 45105928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 136 - 262
Target Start/End: Original strand, 40979416 - 40979542
Alignment:
Q  136 acatgtttggttcaacttaacaaaagcaattctcttctgtaaaagtaataccggctgaagctagaattcctagcttttgagttaactagaatcaattctc 235  Q
    |||||||||||||| |||| ||||| |||||||| |||  ||||| ||| | || |||||||| |||||||||||||||||||| ||| |||||||||||    
T  40979416 acatgtttggttcagcttatcaaaatcaattctcatctccaaaagcaattctggatgaagctacaattcctagcttttgagttagctataatcaattctc 40979515  T
Q  236 cattaaattttatattttgattattac 262  Q
    || ||||||||||||||||||||||||    
T  40979516 caataaattttatattttgattattac 40979542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 136 - 262
Target Start/End: Original strand, 10900129 - 10900255
Alignment:
Q  136 acatgtttggttcaacttaacaaaagcaattctcttctgtaaaagtaataccggctgaagctagaattcctagcttttgagttaactagaatcaattctc 235  Q
    |||||||||||||| |||  ||||| |||||||| |||  ||||| ||| | || |||||||| |||||||| ||||||||||| |||||||||||||||    
T  10900129 acatgtttggttcagcttctcaaaatcaattctcatctccaaaagcaattctggatgaagctacaattcctaacttttgagttagctagaatcaattctc 10900228  T
Q  236 cattaaattttatattttgattattac 262  Q
    || ||||||||||||||||||||||||    
T  10900229 caataaattttatattttgattattac 10900255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 191 - 262
Target Start/End: Original strand, 2526336 - 2526406
Alignment:
Q  191 tgaagctagaattcctagcttttgagttaactagaatcaattctccattaaattttatattttgattattac 262  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  2526336 tgaagctacaattcctagcttttgagttaactagaatcaattctccatt-aattttatattttgattattac 2526406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 139 - 262
Target Start/End: Complemental strand, 19375504 - 19375381
Alignment:
Q  139 tgtttggttcaacttaacaaaagcaattctcttctgtaaaagtaataccggctgaagctagaattcctagcttttgagttaactagaatcaattctccat 238  Q
    ||||||||| | |||  ||||| |||||||| |||  ||||| ||| | || |||||||| |||||||| ||||||||||| ||||||||||||||| |     
T  19375504 tgtttggttaagcttctcaaaatcaattctcatctccaaaagcaattctggatgaagctacaattcctaacttttgagttagctagaatcaattctctaa 19375405  T
Q  239 taaattttatattttgattattac 262  Q
    ||||||||||||||||||||||||    
T  19375404 taaattttatattttgattattac 19375381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 120 - 262
Target Start/End: Complemental strand, 33387812 - 33387671
Alignment:
Q  120 aaaaaggcaatttttcacatgtttggttcaacttaacaaaagcaattctcttctgtaaaagtaataccggctgaagctagaattcctagcttttgagtta 219  Q
    ||||| ||||||| || ||||||||||||| ||| | | |||||||| ||||||  ||||  ||| | || |||||||| |||||||| ||||||||||     
T  33387812 aaaaaagcaatttatcgcatgtttggttca-ctttatagaagcaattttcttctccaaaaacaattctggttgaagctacaattcctaacttttgagttg 33387714  T
Q  220 actagaatcaattctccattaaattttatattttgattattac 262  Q
    || | ||||||||||||||||||||||||||||| ||||||||    
T  33387713 accataatcaattctccattaaattttatattttaattattac 33387671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 109 - 262
Target Start/End: Complemental strand, 33083034 - 33082881
Alignment:
Q  109 cctcaaaattgaaaaaggcaatttttcacatgtttggttcaacttaacaaaagcaattctcttctgtaaaagtaataccggctgaagctagaattcctag 208  Q
    ||||| |||| ||||| ||||| | ||||||| || ||||| ||| ||| || |||||||||| |  |||| |||| | || | ||||||  ||||| |     
T  33083034 cctcagaattaaaaaaagcaatctgtcacatgcttagttcagctttacagaatcaattctcttttccaaaattaattctggttaaagctaccattccaaa 33082935  T
Q  209 cttttgagttaactagaatcaattctccattaaattttatattttgattattac 262  Q
    ||||||||||||||||||||||||||||||  ||||||||||||| ||||||||    
T  33082934 cttttgagttaactagaatcaattctccatctaattttatattttaattattac 33082881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 191 - 262
Target Start/End: Complemental strand, 53713 - 53642
Alignment:
Q  191 tgaagctagaattcctagcttttgagttaactagaatcaattctccattaaattttatattttgattattac 262  Q
    |||||||| ||||||||||||||| |||||||| |||||||| |||| ||||||||||||||| ||||||||    
T  53713 tgaagctacaattcctagcttttgggttaactataatcaattatccaataaattttatattttaattattac 53642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 194 - 262
Target Start/End: Complemental strand, 25256857 - 25256789
Alignment:
Q  194 agctagaattcctagcttttgagttaactagaatcaattctccattaaattttatattttgattattac 262  Q
    ||||| ||||| || |||||||||| | ||||||||||| ||||| |||||||||||||| ||||||||    
T  25256857 agctataattcataacttttgagtttaatagaatcaattatccatgaaattttatattttaattattac 25256789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 194 - 262
Target Start/End: Complemental strand, 25320648 - 25320580
Alignment:
Q  194 agctagaattcctagcttttgagttaactagaatcaattctccattaaattttatattttgattattac 262  Q
    ||||| ||||| || |||||||||| | ||||||||||| ||||| |||||||||||||| ||||||||    
T  25320648 agctataattcataacttttgagtttaatagaatcaattatccatgaaattttatattttaattattac 25320580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 261
Target Start/End: Complemental strand, 29367504 - 29367434
Alignment:
Q  191 tgaagctagaattcctagcttttgagttaactagaatcaattctccattaaattttatattttgattatta 261  Q
    ||||||||||| ||||| ||||||||||   ||||||||||||| |||| ||||||||| |||| ||||||    
T  29367504 tgaagctagaaatcctaacttttgagtttggtagaatcaattctacatttaattttatactttggttatta 29367434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 262
Target Start/End: Complemental strand, 41040182 - 41040111
Alignment:
Q  191 tgaagctagaattcctagcttttgagttaactagaatcaattctccattaaattttatattttgattattac 262  Q
    |||||||| || ||||||||||||  ||  | |||||||||||| | |||||||||| ||||||||||||||    
T  41040182 tgaagctacaaatcctagcttttggcttttcaagaatcaattctacgttaaattttaaattttgattattac 41040111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 221 - 267
Target Start/End: Original strand, 19356583 - 19356629
Alignment:
Q  221 ctagaatcaattctccattaaattttatattttgattattactatct 267  Q
    |||||||||||||| ||||||||||| |||||| |||||||| ||||    
T  19356583 ctagaatcaattctacattaaattttctatttttattattacaatct 19356629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 262
Target Start/End: Complemental strand, 41742238 - 41742197
Alignment:
Q  221 ctagaatcaattctccattaaattttatattttgattattac 262  Q
    |||||||||||||| ||||||||||| |||||||||| ||||    
T  41742238 ctagaatcaattctacattaaattttctattttgattgttac 41742197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 136 - 267
Target Start/End: Complemental strand, 9795 - 9664
Alignment:
Q  136 acatgtttggttcaacttaacaaaagcaattctcttctgtaaaagtaataccggctgaagctagaattcctagcttttgagttaactagaatcaattctc 235  Q
    |||||||||||||| |||  ||||| |||||||| |||  ||||  ||| | || |||||||| |||||||| ||||||||||| |||||||||||||||    
T  9795 acatgtttggttcagcttctcaaaatcaattctcatcttcaaaaacaattctggatgaagctacaattcctaacttttgagttagctagaatcaattctc 9696  T
Q  236 cattaaattttatattttgattattactatct 267  Q
    || |||||||||||||||||||||||| ||||    
T  9695 caataaattttatattttgattattacaatct 9664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0702 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 191 - 261
Target Start/End: Complemental strand, 4610 - 4540
Alignment:
Q  191 tgaagctagaattcctagcttttgagttaactagaatcaattctccattaaattttatattttgattatta 261  Q
    |||||||| |||||||||||||||||||||||| |||||||| | ||||||||||| ||||||| ||||||    
T  4610 tgaagctacaattcctagcttttgagttaactacaatcaattatgcattaaattttctattttggttatta 4540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0662 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 191 - 261
Target Start/End: Original strand, 3488 - 3558
Alignment:
Q  191 tgaagctagaattcctagcttttgagttaactagaatcaattctccattaaattttatattttgattatta 261  Q
    |||||||| |||||||||||||||||||||||| |||||||| | ||||||||||| ||||||| ||||||    
T  3488 tgaagctacaattcctagcttttgagttaactacaatcaattatgcattaaattttctattttggttatta 3558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 221 - 262
Target Start/End: Complemental strand, 33078 - 33037
Alignment:
Q  221 ctagaatcaattctccattaaattttatattttgattattac 262  Q
    ||||||||||||||  ||||||||||||||||||||||||||    
T  33078 ctagaatcaattctaaattaaattttatattttgattattac 33037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 262
Target Start/End: Original strand, 37777 - 37818
Alignment:
Q  221 ctagaatcaattctccattaaattttatattttgattattac 262  Q
    ||||||||||||||  |||||||||| |||||||||||||||    
T  37777 ctagaatcaattctaaattaaattttctattttgattattac 37818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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