View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18563_low_26 (Length: 260)
Name: NF18563_low_26
Description: NF18563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18563_low_26 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 16 - 246
Target Start/End: Complemental strand, 34747330 - 34747100
Alignment:
| Q |
16 |
caaattgtacacctaaaaaattgaagacatgatgaacttagctttggtggagggaataaaagggcaacactttgtattcgcagcatatgaatggaatttg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34747330 |
caaattgtacacctaaaaaattgaagacatgatgaacttagctttggtggagggaataaaagggcaacactttgtattcgcagcatatgaatggaatttg |
34747231 |
T |
|
| Q |
116 |
aaaaggagattaaagagtgagttgacaataactactattgcaaatagtgaattgatgtagttagttattgtgaaatacaaatataaaagaaagtacaaat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
34747230 |
aaaaggagattaaagagtgagttgacaataactactattgcaaataatgaattgatgtagttagttattgtcaaatacaaatataaaagaaagtacaaat |
34747131 |
T |
|
| Q |
216 |
aattttttgattactatgtgctatttttgtt |
246 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |
|
|
| T |
34747130 |
aattttttgattactatgtgctattgttgtt |
34747100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University