View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18563_low_28 (Length: 257)
Name: NF18563_low_28
Description: NF18563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18563_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 20 - 238
Target Start/End: Original strand, 31899444 - 31899663
Alignment:
| Q |
20 |
cttgtctcttctactgttcttccgattaaagaaagggtacctgggtaggccatcaatgccacttatatttcttcctcaactt----ttattccaaaactt |
115 |
Q |
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| T |
31899444 |
cttgtttcttctactgttcttccgattaaagaaagggtacctgggtaggccatcaatgccacttatatttcttcctcaacttatatttatttatcaactt |
31899543 |
T |
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| Q |
116 |
atatttcttccttggatgcatgcattgcagggattacacggtgtccttcaaaattggcaacagtcccgtacagtcttttaaccttgatattgacacgggt |
215 |
Q |
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| T |
31899544 |
at---tcttattatgatgcatgcattgcagggattacacggtgtccttcaaaattggcaacaatcatgtacagtcttttaaccttgatattgacacgggt |
31899640 |
T |
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| Q |
216 |
agtgatttcacttgggttcagtg |
238 |
Q |
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|||||| |||||||||||||||| |
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| T |
31899641 |
agtgatctcacttgggttcagtg |
31899663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 26 - 238
Target Start/End: Original strand, 885938 - 886161
Alignment:
| Q |
26 |
tcttctactgttcttccgattaaagaaagggtacctgggtaggccatcaatgccacttatatttcttcctcaacttttattccaaaacttatat------ |
119 |
Q |
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| T |
885938 |
tcttctactgttcttccgcttaaagaaaggtcacttgggtatgccatcaatgccacttatatttcttcctcaacttttattccaaaacttatatatatca |
886037 |
T |
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| Q |
120 |
-----ttcttccttggatgcatgcattgcagggattacacggtgtccttcaaaattggcaacagtcccgtacagtcttttaaccttgatattgacacggg |
214 |
Q |
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| T |
886038 |
acttattcttattatgatgcatgcattgcagggattacacggtgtccttcaaatttggcaacaatcccgtacagtcctttaaccttgatattgacacggg |
886137 |
T |
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| Q |
215 |
tagtgatttcacttgggttcagtg |
238 |
Q |
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| T |
886138 |
tagtgaactcacttgggttcagtg |
886161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 130 - 238
Target Start/End: Original strand, 31660104 - 31660213
Alignment:
| Q |
130 |
gatgcatgcattgcagggattacacggtgtccttcaaaattggcaa-cagtcccgtacagtcttttaaccttgatattgacacgggtagtgatttcactt |
228 |
Q |
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| T |
31660104 |
gatgcatgcattgcagggattacacagtgtccctcaaaattggctggcaattccgtacagccctttaacctttttattgacacgggtactgatttcactt |
31660203 |
T |
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| Q |
229 |
gggttcagtg |
238 |
Q |
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| T |
31660204 |
gggttcagtg |
31660213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 130 - 238
Target Start/End: Complemental strand, 31936282 - 31936173
Alignment:
| Q |
130 |
gatgcatgcattgcagggattacacggtgtccttcaaaattggcaa-cagtcccgtacagtcttttaaccttgatattgacacgggtagtgatttcactt |
228 |
Q |
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||||||||||||||||||||||||| |||||| ||||||||||| || | |||||||| | ||||||||| |||||||||||||| ||||||||||| |
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| T |
31936282 |
gatgcatgcattgcagggattacacagtgtccctcaaaattggctggcaattccgtacagccctttaacctttttattgacacgggtactgatttcactt |
31936183 |
T |
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| Q |
229 |
gggttcagtg |
238 |
Q |
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|||||||||| |
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| T |
31936182 |
gggttcagtg |
31936173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 130 - 238
Target Start/End: Complemental strand, 31974607 - 31974498
Alignment:
| Q |
130 |
gatgcatgcattgcagggattacacggtgtccttcaaaattggcaa-cagtcccgtacagtcttttaaccttgatattgacacgggtagtgatttcactt |
228 |
Q |
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||||||||| ||||||||||||||| |||||| ||||||||| | || | |||||||| | ||||||||| |||||||||||||| |||| |||||| |
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| T |
31974607 |
gatgcatgctttgcagggattacacagtgtccctcaaaattgactggcaattccgtacagccctttaacctttttattgacacgggtactgatctcactt |
31974508 |
T |
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| Q |
229 |
gggttcagtg |
238 |
Q |
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| T |
31974507 |
gtgttcagtg |
31974498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 232
Target Start/End: Complemental strand, 31876349 - 31876269
Alignment:
| Q |
149 |
ttacacggtgtccttcaaaattggcaacagtcccgtacagtcttttaaccttgatattgacacgggtagtgatttcacttgggt |
232 |
Q |
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| T |
31876349 |
ttacacggtgtccctcaaaattggcta---tcccggacagtctttcgacgtttttattgacacgggtagtgatctcacttgggt |
31876269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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