View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18563_low_31 (Length: 250)
Name: NF18563_low_31
Description: NF18563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18563_low_31 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 250
Target Start/End: Original strand, 7907096 - 7907333
Alignment:
| Q |
19 |
tttgcaaggtgcgaaattctgattcctgatcgtacga----gctcttagctcttt-aagtttcatgtatctagtctgatttatgatttgtaaatttgcag |
113 |
Q |
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| T |
7907096 |
tttgcaaggtgcgaaattctgattcctgatcgtatgaatgagctcttatctcttttaagtttcatgtatctagtctgatttgtgatttgtaaatttgcag |
7907195 |
T |
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| Q |
114 |
taccttgtgtaacatctaataatcttcagttaaatgtttgcattttgttccacgaaatttgcagtaccttgtttcatcatatgcatttggattactcagt |
213 |
Q |
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| T |
7907196 |
taccttgtgtaacatctaataatcttcagtgaaatgtttgcattttgttccacgaaatttgcagtaccttgtttcatcatatgcatttggattactcagt |
7907295 |
T |
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| Q |
214 |
tgtgtattctgtgcatgcagta-agtctatgtagctgc |
250 |
Q |
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| T |
7907296 |
tgtgtattctgtgcatgcagtatagtctatgtagctgc |
7907333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 7896700 - 7896777
Alignment:
| Q |
19 |
tttgcaaggtgcgaaattctgattcctgatcgtacgagctcttagctctttaagtttcatgtatctagtctgatttat |
96 |
Q |
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| T |
7896700 |
tttgcaaggtgcgaaattctgattcctgaacttatgagctcttagctctctaagtttcatgtatctagtctgatttat |
7896777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 192 - 250
Target Start/End: Original strand, 7897625 - 7897682
Alignment:
| Q |
192 |
atatgcatttggattactcagttgtgtattctgtgcatgcagtaagtctatgtagctgc |
250 |
Q |
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| T |
7897625 |
atatgcatttggattactcagttgtgtattctgtgcatgcagt-agtctatgtagctgc |
7897682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 163
Target Start/End: Original strand, 7896805 - 7896844
Alignment:
| Q |
123 |
taacatctaataatcttcagttaaatgtttgcattttgttc |
163 |
Q |
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| T |
7896805 |
taacatctaataaacttcagttaaatg-ttgcattttgttc |
7896844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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