View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18563_low_38 (Length: 236)
Name: NF18563_low_38
Description: NF18563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18563_low_38 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 34564292 - 34564072
Alignment:
| Q |
16 |
taatctacccctcttatggaaggtggaggtgttatataagatgtacttggaagggatgcaacttgagatgtttcatgtgatgaagtagtagcagatgttc |
115 |
Q |
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| T |
34564292 |
taatctacacctctaatggaaggtggaggtgttacataagatgtacttggaagggatgcaacttgagatgtttcatgtgatgaagtagtagcagatgttc |
34564193 |
T |
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| Q |
116 |
taggttaggtgagacaagacttttgatcatgtgtactagtcacaaaataagtcactgaatcggttgtttgaaccaaatcgatgtctagatttcgtctctg |
215 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||| |||||||||| |||| | |||||||||||| |
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| T |
34564192 |
taggttaggtgagacaagacttttgatcgtgtgtactagtcacaaaataagtcactgaattggctgtttcaaccaaatcggtgtccacatttcgtctctg |
34564093 |
T |
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| Q |
216 |
aatcagtctcccaaaacgtct |
236 |
Q |
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| T |
34564092 |
aatcagtctcccaaagcgtct |
34564072 |
T |
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