View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18563_low_42 (Length: 214)
Name: NF18563_low_42
Description: NF18563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18563_low_42 |
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Alignment Details
Target: chr7 (Bit Score: 87; Significance: 7e-42; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 41458513 - 41458402
Alignment:
| Q |
1 |
ctaattaagtgaaaagagaaataaaacaaatgaatatacacgcaccatatctatttaataaaaatattgattaatggatcaaagaaattatagcttagaa |
100 |
Q |
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| T |
41458513 |
ctaattaggggaaaagagaaataaaacaaatgaatatacacgcaccatat--atttaataaaaatattgattaatggatctaagaaattatagcttagaa |
41458416 |
T |
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| Q |
101 |
ctcaattaattaaa |
114 |
Q |
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||||||||| |||| |
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| T |
41458415 |
ctcaattaaataaa |
41458402 |
T |
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Target: chr7; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 145 - 214
Target Start/End: Complemental strand, 41458377 - 41458308
Alignment:
| Q |
145 |
aacaattatacgtgaagcagtataatttatgacattttttattaaaacacgtatcatatgagccaatgca |
214 |
Q |
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|||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
41458377 |
aacaattatacgagaagcagtataatttatgacaatttttattaaaacacgtatcatatgagccaatgca |
41458308 |
T |
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