View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18563_low_43 (Length: 204)
Name: NF18563_low_43
Description: NF18563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18563_low_43 |
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Alignment Details
Target: chr4 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 17 - 188
Target Start/End: Complemental strand, 54647080 - 54646908
Alignment:
| Q |
17 |
acagacgtgaaattagtat-gctagcagagagaaccaagactgagggggcagagataaaataacaaccaatgccctggtttcttggatataaattcatac |
115 |
Q |
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| T |
54647080 |
acagacgtgaaattagtgttgctagcagagagaaccaagactgagggggcagagataaaataacaacaaatgccctggtttcttggatatatatttatac |
54646981 |
T |
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| Q |
116 |
ttacaatcatacagtttctaagcggagaggggagttatatacaactacaagttggttggcaaataacataact |
188 |
Q |
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| T |
54646980 |
ttacaatcatacagtttctaagcggagaggggagttatatacaactacaagttggttggcaaataacataact |
54646908 |
T |
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