View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18563_low_5 (Length: 509)
Name: NF18563_low_5
Description: NF18563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18563_low_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 20 - 494
Target Start/End: Original strand, 16604093 - 16604567
Alignment:
| Q |
20 |
cgaagttcgaaggaaatcgcgaaagcgaataactatcatatgcttgtccacagttgtccttattggtatcgtttttgcagcggtgtttggaaccgttgct |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
16604093 |
cgaagttcgaaggaaatcgcgaaagcgaataaccatcatatgcttgtccacagttgtccttattggtatcgtttttgcagcggtgtttggaaccattgct |
16604192 |
T |
|
| Q |
120 |
cacaacaatgctcgtaatgatgacaacaacaacaacgataatgataacaacgatcaatctctttcaagttcaattaaggctgtttgtgatgttacactgt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
16604193 |
cacaacaatgctcgtaatgatgacaacaacaacaacgagaatgataacaacgatcaatctctttcaagtgcaattaaggctgtttgtgatgttacactgt |
16604292 |
T |
|
| Q |
220 |
acaaggattcatgtgaaaaaagccttagtcctcttgttcaaccgggtcagcaaattcgacccgaggagttgttcaaattgtctattcaagtggccttaac |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
16604293 |
acaaggattcatgtgaaaaaagccttagtcctcttgttcaaccgggtcagcaaattcgacccgaggagttgttcaaattgtctattcaagtggcattaac |
16604392 |
T |
|
| Q |
320 |
tgcggtatcgaaaggtgttgagtatttatctgaccaggcaacttttaatgacttgaacttgaatttagataatagaacaaaggaagctttgatcaattgt |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16604393 |
tgcggtatcgaaaggtgttgagtatttatctgaccatgcaacttttaatgacttgaacttgaatttagataatagaacaaaggaagctttgatcaattgt |
16604492 |
T |
|
| Q |
420 |
aaggatcttttcggtcttgctgttgatgatttgaatagctctttgtcttatggagggaaatcttctttgcttgat |
494 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16604493 |
aaggatcttttcggtcttgctgttgatgatttgaatagctctttgtcttatggagggaaatcttctttgcttgat |
16604567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University