View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18563_low_7 (Length: 484)
Name: NF18563_low_7
Description: NF18563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18563_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 391; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 8 - 471
Target Start/End: Complemental strand, 5771118 - 5770654
Alignment:
| Q |
8 |
cattcattatgagtatagtgtagtattttggttcattggcattgaaataataaccttgctgcatcataaataacataaagttgctcatgtactccctaga |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5771118 |
cattcattatgagtatagtgtagtattttggttcattggcattgaaataataaccttgctgcatcataaataacataaagttgctcatgtactccctaga |
5771019 |
T |
|
| Q |
108 |
aaaggctgatgcatgatgtatctttctgtctcttttgataatttaaaagnnnnnnnnnnn-atctcttttaccacatgtcctgtaattatgtacacaaat |
206 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||||||||||| |
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| T |
5771018 |
aaaggctgatgcatgatgtatctttctgtctcttttgataatttgaaagttttttttttttatctcttttaccacatgttctgtaattatgtacacaaat |
5770919 |
T |
|
| Q |
207 |
tggggttaaactgtgcataaaagttactgatgtatgatgtatctttctttcttactctttttnnnnnnntatgcagagactaattgtggttcatttgttt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
5770918 |
tggggttaaactgtgcataaaagttactgatgtatgatgtatctttctttcttactctttttaaaaaaatatgcagagactaattgtggttcatttgttt |
5770819 |
T |
|
| Q |
307 |
tcgtgtttatacatcaacacatgcctggtccatttgttttcattgcttttaggagggagatagaataaatattagcagggttcaaagttcatgttaatag |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
5770818 |
tcgtgtttatacatcaacacatgcctggtccatttgttttcattgcttttaggagggagatagaaaaaatattagcagggttcaaagttcatgttaatag |
5770719 |
T |
|
| Q |
407 |
cactaattggtccattttgcatatttgagcatggtaatgttgtaaagttgacttagtttgttgtc |
471 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5770718 |
cactaattggtccattttgcatatttgagcatggtaatgttgtaaagttgacttagtttgttgtc |
5770654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 421
Target Start/End: Complemental strand, 5770648 - 5770613
Alignment:
| Q |
386 |
gttcaaagttcatgttaatagcactaattggtccat |
421 |
Q |
| |
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||||||||||||||||||||| |||||||||||||| |
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| T |
5770648 |
gttcaaagttcatgttaatagtactaattggtccat |
5770613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 369; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 8 - 471
Target Start/End: Original strand, 33866934 - 33867395
Alignment:
| Q |
8 |
cattcattatgagtatagtgtagtattttggttcattggcattgaaataataaccttgctgcatcataaataacataaagttgctcatgtactccctaga |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33866934 |
cattcattatgagtatagtgtagtattttggttcattggcattgaaataataatcttgctgcatcataaataacataaagttgctcatgtactccctaga |
33867033 |
T |
|
| Q |
108 |
aaaggctgatgcatgatgtatctttctgtctcttttgataatttaaaagnnnnnnnnnnnatctcttttaccacatgtcctgtaattatgtacacaaatt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||| ||||||||||||||||||||| |
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| T |
33867034 |
aaaggctgatgcatgatgtatctttctgtctcttttgataatttgaaagttttttttt--atctcttttaccatatgttctgtaattatgtacacaaatt |
33867131 |
T |
|
| Q |
208 |
ggggttaaactgtgcataaaagttactgatgtatgatgtatctttctttcttactctttttnnnnnnntatgcagagactaattgtggttcatttgtttt |
307 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
33867132 |
ggtgttaaactgtgcataaaagttactgatgtatgatgtatctttctttcttactctttttaaaaaaatatgcagagtctaattgtggttcatttgtttt |
33867231 |
T |
|
| Q |
308 |
cgtgtttatacatcaacacatgcctggtccatttgttttcattgcttttaggagggagatagaataaatattagcagggttcaaagttcatgttaatagc |
407 |
Q |
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| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33867232 |
cctgtttatacatcaacgcatgcctgatccatttgttttcattgcttttaggagggagatagaataaatattagcagggttcaaagttcatgttaatagc |
33867331 |
T |
|
| Q |
408 |
actaattggtccattttgcatatttgagcatggtaatgttgtaaagttgacttagtttgttgtc |
471 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33867332 |
actaattggtccattttgcatatttgagcatggtaatgttgtaaagttgacttagtttgttgtc |
33867395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 408 - 472
Target Start/End: Original strand, 43904661 - 43904725
Alignment:
| Q |
408 |
actaattggtccattttgcatatttgagcatggtaatgttgtaaagttgacttagtttgttgtct |
472 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||| |
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| T |
43904661 |
actaattggtccattttgcatatttgagtatggtaatgttgtaaagttgacttggtttgtagtct |
43904725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 421
Target Start/End: Original strand, 33867401 - 33867436
Alignment:
| Q |
386 |
gttcaaagttcatgttaatagcactaattggtccat |
421 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |
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|
| T |
33867401 |
gttcaaagttcatgttaatagtactaattggtccat |
33867436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 5894466 - 5894390
Alignment:
| Q |
21 |
tatagtgtagtattttggttcattggcattgaaataataaccttgctgcatcataaataacataaagttgctcatgt |
97 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||| |
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| T |
5894466 |
tatagtgtagtattttggttcattggcattgagataataaccttgctccatcataaataacataaacttgctcatgt |
5894390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 88 - 264
Target Start/End: Complemental strand, 5894221 - 5894049
Alignment:
| Q |
88 |
ttgctcatgtactccctagaaaaggctgatgcatgatgtatctttctgtctcttttgataatttaaaagnnnnnnnnnnnatctcttttaccacatgtcc |
187 |
Q |
| |
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||||||||||| || ||||||||| |||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |
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| T |
5894221 |
ttgctcatgtattcactagaaaagtctgaattatgatgtatctttctgtctcttttgataattggaaa----ctctttgtatctcttttaccacatgttt |
5894126 |
T |
|
| Q |
188 |
tgtaattatgtacacaaattggggttaaactgtgcataaaagttactgatgtatgatgtatctttctttcttactct |
264 |
Q |
| |
|
|||||||||| ||||||||| ||||||| |||||||||||||| |||| ||||| ||||||||||||| ||||||| |
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|
| T |
5894125 |
tgtaattatgcacacaaattagggttaatttgtgcataaaagttgctgacgtatgctgtatctttcttttttactct |
5894049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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