View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18563_low_9 (Length: 430)

Name: NF18563_low_9
Description: NF18563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18563_low_9
NF18563_low_9
[»] chr8 (7 HSPs)
chr8 (200-413)||(31790512-31790725)
chr8 (305-413)||(31785563-31785671)
chr8 (69-130)||(18606020-18606081)
chr8 (200-260)||(31786245-31786306)
chr8 (73-130)||(4072584-4072641)
chr8 (73-130)||(21441950-21442007)
chr8 (73-130)||(41323538-41323595)
[»] chr2 (10 HSPs)
chr2 (17-198)||(14160532-14160714)
chr2 (17-202)||(14950572-14950757)
chr2 (69-128)||(1593083-1593142)
chr2 (73-130)||(1043350-1043407)
chr2 (73-130)||(9190339-9190396)
chr2 (74-130)||(2096104-2096160)
chr2 (69-130)||(36314566-36314628)
chr2 (74-130)||(41732634-41732690)
chr2 (80-141)||(9754030-9754091)
chr2 (78-130)||(21613389-21613441)
[»] chr1 (12 HSPs)
chr1 (63-199)||(40724093-40724232)
chr1 (74-130)||(36156976-36157032)
chr1 (69-130)||(7493399-7493460)
chr1 (73-130)||(10619795-10619852)
chr1 (73-130)||(44592589-44592646)
chr1 (73-128)||(39618458-39618513)
chr1 (77-130)||(44429838-44429891)
chr1 (74-130)||(27773555-27773611)
chr1 (73-130)||(15757408-15757465)
chr1 (73-130)||(43410939-43410996)
chr1 (17-49)||(40723884-40723916)
chr1 (78-130)||(50099607-50099659)
[»] chr4 (15 HSPs)
chr4 (73-176)||(21733835-21733939)
chr4 (73-130)||(13768530-13768587)
chr4 (74-130)||(27512924-27512980)
chr4 (74-130)||(32595121-32595177)
chr4 (74-130)||(4608125-4608181)
chr4 (78-130)||(18493819-18493871)
chr4 (78-130)||(22375924-22375976)
chr4 (74-130)||(23237540-23237596)
chr4 (74-130)||(39606320-39606376)
chr4 (78-130)||(54508597-54508649)
chr4 (73-127)||(43892879-43892933)
chr4 (69-130)||(32824618-32824679)
chr4 (69-130)||(46721871-46721932)
chr4 (77-141)||(20618747-20618811)
chr4 (78-130)||(34021334-34021386)
[»] scaffold0049 (2 HSPs)
scaffold0049 (69-130)||(46876-46937)
scaffold0049 (77-130)||(15004-15057)
[»] chr6 (7 HSPs)
chr6 (69-130)||(3886142-3886203)
chr6 (69-130)||(583311-583372)
chr6 (74-130)||(7590518-7590574)
chr6 (73-130)||(13703076-13703133)
chr6 (73-128)||(34729509-34729564)
chr6 (77-130)||(29363905-29363958)
chr6 (73-130)||(30386818-30386875)
[»] chr7 (8 HSPs)
chr7 (69-130)||(45809992-45810053)
chr7 (149-199)||(24027002-24027052)
chr7 (74-130)||(23333327-23333383)
chr7 (73-128)||(48609462-48609517)
chr7 (80-130)||(27571631-27571681)
chr7 (77-130)||(83978-84031)
chr7 (73-130)||(33335981-33336038)
chr7 (78-130)||(41532413-41532465)
[»] chr5 (5 HSPs)
chr5 (73-130)||(17769333-17769390)
chr5 (74-130)||(6735913-6735969)
chr5 (74-130)||(39570833-39570889)
chr5 (90-176)||(42092335-42092421)
chr5 (78-130)||(21360906-21360958)
[»] chr3 (8 HSPs)
chr3 (73-130)||(46823536-46823593)
chr3 (74-130)||(22775283-22775339)
chr3 (74-130)||(26769844-26769900)
chr3 (74-130)||(37057526-37057582)
chr3 (73-128)||(35238731-35238786)
chr3 (74-130)||(37224392-37224448)
chr3 (73-128)||(17653344-17653399)
chr3 (73-128)||(30500944-30500999)


Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 200 - 413
Target Start/End: Complemental strand, 31790725 - 31790512
Alignment:
Q  200 ctttaggttctctcaccacagctaaatttcatggcatgaagcttatatatttcctaattcaacttaaataagtgtgtttcaggcgatacttgtcaccttg 299  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  31790725 ctttaggttctctcaccacagctaaatttcatggcatgacgcttatatatttcctaattcaacttaaataagtgtgtttcaggcgatacttgtcgccttg 31790626  T
Q  300 tctatagacccaaaaaatattcatttacatgatgccttaacaagtgtcttatttttattatatatgagaatatttatctgacttactaaaaatataacca 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  31790625 tctatagacccaaaaaatattcatttacatgatgccttaacaagtgtcttatttttattatatatgagaatatttatctgaattactaaaaatataacca 31790526  T
Q  400 acagcattcctgct 413  Q
    ||||||||||||||    
T  31790525 acagcattcctgct 31790512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 305 - 413
Target Start/End: Complemental strand, 31785671 - 31785563
Alignment:
Q  305 agacccaaaaaatattcatttacatgatgccttaacaagtgtcttatttttattatatatgagaatatttatctgacttactaaaaatataaccaacagc 404  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  31785671 agaccccaaaaaaattcatttacatgatgccttaacaagtgtcttatttttattatatatgagaatatttatctgaattactaaaaatattaccaacagc 31785572  T
Q  405 attcctgct 413  Q
    |||||||||    
T  31785571 attcctgct 31785563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 69 - 130
Target Start/End: Complemental strand, 18606081 - 18606020
Alignment:
Q  69 aataaaacttggggtagccaactatgtattattaggggtagctaagtatacaaatataccta 130  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||| |||| |||||||||||    
T  18606081 aataaaacttggggtagccaaatatatattattaggggtagctaaatataaaaatataccta 18606020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 200 - 260
Target Start/End: Complemental strand, 31786306 - 31786245
Alignment:
Q  200 ctttaggttctctcaccacagctaaatttcatggcatgaagcttata-tatttcctaattca 260  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||    
T  31786306 ctttaggttctctcaccacagataaatttcatggcatgaagcttatattatttcctacttca 31786245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 73 - 130
Target Start/End: Original strand, 4072584 - 4072641
Alignment:
Q  73 aaacttggggtagccaactatgtattattaggggtagctaagtatacaaatataccta 130  Q
    |||||||||||||| || ||| ||||||||||||||||||| |||| |||||||||||    
T  4072584 aaacttggggtagctaattatatattattaggggtagctaaatataaaaatataccta 4072641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 73 - 130
Target Start/End: Original strand, 21441950 - 21442007
Alignment:
Q  73 aaacttggggtagccaactatgtattattaggggtagctaagtatacaaatataccta 130  Q
    |||||||||||||| || ||| ||||||||||||||||||| |||| |||||||||||    
T  21441950 aaacttggggtagctaaatatatattattaggggtagctaaatataaaaatataccta 21442007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 73 - 130
Target Start/End: Original strand, 41323538 - 41323595
Alignment:
Q  73 aaacttggggtagccaactatgtattattaggggtagctaagtatacaaatataccta 130  Q
    |||||||||||||| || ||| ||||||||||||||||||| |||| |||||||||||    
T  41323538 aaacttggggtagctaattatatattattaggggtagctaaatataaaaatataccta 41323595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 113; Significance: 4e-57; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 17 - 198
Target Start/End: Original strand, 14160532 - 14160714
Alignment:
Q  17 agaatggaatataaagggttataatttactaattacttannnnnnnagctataataaaacttggggtagccaactatgtattattaggggtagctaagta 116  Q
    |||||||||||||||||||| ||||||||||||||||||       ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  14160532 agaatggaatataaagggttgtaatttactaattacttatttttgtagctataataaaacttggggtagccaactatatattattaggggtagctaagta 14160631  T
Q  117 tacaaatatacctaattattcaat-annnnnnnctctttggggtagccatagccaccccttgagcatgaaagcatccgcccct 198  Q
    |||||||||||||| ||||||||| |       ||||||||||||||||||||||||||||||| |||||||||||| |||||    
T  14160632 tacaaatatacctacttattcaatgatttttttctctttggggtagccatagccaccccttgagtatgaaagcatccacccct 14160714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 17 - 202
Target Start/End: Original strand, 14950572 - 14950757
Alignment:
Q  17 agaatggaatataaagggttataatttactaattacttannnnnnnagctataataaaacttggggtagccaactatgtattattaggggtagctaagta 116  Q
    ||||||||||||||| | ||||||||||||||||||||        |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  14950572 agaatggaatataaaagattataatttactaattactt-tttttttagctataataaaactttgggtagccaactatgtattattaggggtagctaagta 14950670  T
Q  117 tacaaatatacctaattattcaa-tannnnnnnctctttggggtagccatagccaccccttgagcatgaaagcatccgcccctgctt 202  Q
    |||||||||||||| |||||||| ||       ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  14950671 tacaaatatacctacttattcaattatttttttctctttggggtagccatagccaccccttgagtatgaaagcatccgcccctgctt 14950757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 69 - 128
Target Start/End: Original strand, 1593083 - 1593142
Alignment:
Q  69 aataaaacttggggtagccaactatgtattattaggggtagctaagtatacaaatatacc 128  Q
    ||||||||||||||||||||| ||| |||||||||||||| |||| |||| |||||||||    
T  1593083 aataaaacttggggtagccaaatatatattattaggggtaactaaatataaaaatatacc 1593142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 73 - 130
Target Start/End: Original strand, 1043350 - 1043407
Alignment:
Q  73 aaacttggggtagccaactatgtattattaggggtagctaagtatacaaatataccta 130  Q
    ||||||||||||||||| ||  ||||||||||||||||||| |||| |||||||||||    
T  1043350 aaacttggggtagccaaataaatattattaggggtagctaaatataaaaatataccta 1043407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 73 - 130
Target Start/End: Original strand, 9190339 - 9190396
Alignment:
Q  73 aaacttggggtagccaactatgtattattaggggtagctaagtatacaaatataccta 130  Q
    ||||||||||||||||| ||  ||||||||||||||||||| |||| |||||||||||    
T  9190339 aaacttggggtagccaaataaatattattaggggtagctaaatataaaaatataccta 9190396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 74 - 130
Target Start/End: Complemental strand, 2096160 - 2096104
Alignment:
Q  74 aacttggggtagccaactatgtattattaggggtagctaagtatacaaatataccta 130  Q
    |||||||||||||||| ||| |||||||||||||||||||  ||| |||||||||||    
T  2096160 aacttggggtagccaaatatatattattaggggtagctaaacataaaaatataccta 2096104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 69 - 130
Target Start/End: Original strand, 36314566 - 36314628
Alignment:
Q  69 aataaaacttgggg-tagccaactatgtattattaggggtagctaagtatacaaatataccta 130  Q
    |||||||||||||| ||||||| ||| |||||||||||||| |||| |||| |||||||||||    
T  36314566 aataaaacttgggggtagccaaatatatattattaggggtaactaaatataaaaatataccta 36314628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 130
Target Start/End: Original strand, 41732634 - 41732690
Alignment:
Q  74 aacttggggtagccaactatgtattattaggggtagctaagtatacaaatataccta 130  Q
    |||||||||||||||| ||| ||||||||||||||||||  |||| ||| |||||||    
T  41732634 aacttggggtagccaaatatatattattaggggtagctacatataaaaacataccta 41732690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 141
Target Start/End: Complemental strand, 9754091 - 9754030
Alignment:
Q  80 gggtagccaactatgtattattaggggtagctaagtatacaaatatacctaattattcaata 141  Q
    |||||||||| ||| ||||||||  ||||||||| |||| ||||||||||| ||| ||||||    
T  9754091 gggtagccaattatatattattaacggtagctaaatataaaaatatacctacttaatcaata 9754030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 130
Target Start/End: Original strand, 21613389 - 21613441
Alignment:
Q  78 tggggtagccaactatgtattattaggggtagctaagtatacaaatataccta 130  Q
    |||||||||||| ||| |||||||||||||||| || ||||  ||||||||||    
T  21613389 tggggtagccaaatatatattattaggggtagccaaatataataatataccta 21613441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 63 - 199
Target Start/End: Original strand, 40724093 - 40724232
Alignment:
Q  63 agctataataaaacttggggtagccaactatgtattattaggggtagctaagtatacaaatatacctaattattcaat--annnnnnnctcttt-ggggt 159  Q
    |||||||||||||||||| ||| |||||||||||||||||||  ||| |||||||||||||||||||| |||||||||  |       |||||| |||||    
T  40724093 agctataataaaacttggagtaaccaactatgtattattaggaatagataagtatacaaatatacctacttattcaatgaacttttttctctttgggggt 40724192  T
Q  160 agccatagccaccccttgagcatgaaagcatccgcccctg 199  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  40724193 agccatagccaccccttgagtatgaaagcatccgcccctg 40724232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 74 - 130
Target Start/End: Original strand, 36156976 - 36157032
Alignment:
Q  74 aacttggggtagccaactatgtattattaggggtagctaagtatacaaatataccta 130  Q
    |||||||||||||||| ||| |||||||||||||||||||| ||| |||||||||||    
T  36156976 aacttggggtagccaaatatatattattaggggtagctaagcataaaaatataccta 36157032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 69 - 130
Target Start/End: Complemental strand, 7493460 - 7493399
Alignment:
Q  69 aataaaacttggggtagccaactatgtattattaggggtagctaagtatacaaatataccta 130  Q
    ||||||||||||||||||||| ||| ||||||| | ||||||||| |||| |||||||||||    
T  7493460 aataaaacttggggtagccaaatatatattattggaggtagctaaatataaaaatataccta 7493399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 73 - 130
Target Start/End: Complemental strand, 10619852 - 10619795
Alignment:
Q  73 aaacttggggtagccaactatgtattattaggggtagctaagtatacaaatataccta 130  Q
    |||||||||||||| || ||| ||||||||||||||||||| |||| |||||||||||    
T  10619852 aaacttggggtagctaaatatatattattaggggtagctaaatataaaaatataccta 10619795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 73 - 130
Target Start/End: Complemental strand, 44592646 - 44592589
Alignment:
Q  73 aaacttggggtagccaactatgtattattaggggtagctaagtatacaaatataccta 130  Q
    ||||||||||||||||| ||| |||||||||||||||||||  ||| |||||||||||    
T  44592646 aaacttggggtagccaaatatatattattaggggtagctaaacataaaaatataccta 44592589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 73 - 128
Target Start/End: Original strand, 39618458 - 39618513
Alignment:
Q  73 aaacttggggtagccaactatgtattattaggggtagctaagtatacaaatatacc 128  Q
    ||||||||||||||||| ||| ||||||||||||||||| | |||| |||||||||    
T  39618458 aaacttggggtagccaaatatatattattaggggtagcttaatataaaaatatacc 39618513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 77 - 130
Target Start/End: Original strand, 44429838 - 44429891
Alignment:
Q  77 ttggggtagccaactatgtattattaggggtagctaagtatacaaatataccta 130  Q
    ||||||||||||| ||  ||||||||||||||||||| |||| |||||||||||    
T  44429838 ttggggtagccaaataaatattattaggggtagctaaatataaaaatataccta 44429891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 130
Target Start/End: Complemental strand, 27773611 - 27773555
Alignment:
Q  74 aacttggggtagccaactatgtattattaggggtagctaagtatacaaatataccta 130  Q
    |||||||||||| ||| ||| |||||||||||||||||||  ||| |||||||||||    
T  27773611 aacttggggtaggcaaatatatattattaggggtagctaaacataaaaatataccta 27773555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 130
Target Start/End: Complemental strand, 15757465 - 15757408
Alignment:
Q  73 aaacttggggtagccaactatgtattattaggggtagctaagtatacaaatataccta 130  Q
    |||||||||||||  || ||| ||||||||||||||| ||| |||| |||||||||||    
T  15757465 aaacttggggtagttaaatatatattattaggggtagataaatataaaaatataccta 15757408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 130
Target Start/End: Complemental strand, 43410996 - 43410939
Alignment:
Q  73 aaacttggggtagccaactatgtattattaggggtagctaagtatacaaatataccta 130  Q
    |||||| ||||| |||| ||| ||||||||||| ||||||| |||| |||||||||||    
T  43410996 aaacttagggtaaccaaatatatattattagggatagctaaatataaaaatataccta 43410939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 40723884 - 40723916
Alignment:
Q  17 agaatggaatataaagggttataatttactaat 49  Q
    |||||| ||||||||||||||||||||||||||    
T  40723884 agaatgaaatataaagggttataatttactaat 40723916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 130
Target Start/End: Complemental strand, 50099659 - 50099607
Alignment:
Q  78 tggggtagccaactatgtattattaggggtagctaagtatacaaatataccta 130  Q
    |||||||| ||| ||| |||||||||||||||||||  ||| |||||||||||    
T  50099659 tggggtagtcaaatatatattattaggggtagctaaacataaaaatataccta 50099607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 73 - 176
Target Start/End: Complemental strand, 21733939 - 21733835
Alignment:
Q  73 aaacttggggtagccaactatgtattattaggggtagctaagtatacaaatatacctaattattcaat-annnnnnnctctttggggtagccatagccac 171  Q
    ||||||||||||||||||||| ||||||||||||||||||| |||| |  |||||||| ||||||||| |       |||||||||||||||||||||||    
T  21733939 aaacttggggtagccaactatatattattaggggtagctaaatatatatgtatacctacttattcaataattgttttctctttggggtagccatagccac 21733840  T
Q  172 ccctt 176  Q
    |||||    
T  21733839 ccctt 21733835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 73 - 130
Target Start/End: Complemental strand, 13768587 - 13768530
Alignment:
Q  73 aaacttggggtagccaactatgtattattaggggtagctaagtatacaaatataccta 130  Q
    |||||||||||||| || ||| ||||||||||||||||||| |||| |||||||||||    
T  13768587 aaacttggggtagctaaatatatattattaggggtagctaaatataaaaatataccta 13768530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 74 - 130
Target Start/End: Complemental strand, 27512980 - 27512924
Alignment:
Q  74 aacttggggtagccaactatgtattattaggggtagctaagtatacaaatataccta 130  Q
    |||||||||||||||| ||| |||||||||||||||||||  ||| |||||||||||    
T  27512980 aacttggggtagccaaatatatattattaggggtagctaaacataaaaatataccta 27512924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 74 - 130
Target Start/End: Original strand, 32595121 - 32595177
Alignment:
Q  74 aacttggggtagccaactatgtattattaggggtagctaagtatacaaatataccta 130  Q
    |||||||||||||||| ||| |||||||||||||||||||  ||| |||||||||||    
T  32595121 aacttggggtagccaaatatatattattaggggtagctaaacataaaaatataccta 32595177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 130
Target Start/End: Complemental strand, 4608181 - 4608125
Alignment:
Q  74 aacttggggtagccaactatgtattattaggggtagctaagtatacaaatataccta 130  Q
    |||||| ||||||||| ||| |||||||||||||||||||  ||| |||||||||||    
T  4608181 aacttgaggtagccaaatatatattattaggggtagctaaacataaaaatataccta 4608125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 130
Target Start/End: Original strand, 18493819 - 18493871
Alignment:
Q  78 tggggtagccaactatgtattattaggggtagctaagtatacaaatataccta 130  Q
    |||||||||||| ||| |||||||||||||||||||  ||| |||||||||||    
T  18493819 tggggtagccaaatatatattattaggggtagctaaacataaaaatataccta 18493871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 130
Target Start/End: Original strand, 22375924 - 22375976
Alignment:
Q  78 tggggtagccaactatgtattattaggggtagctaagtatacaaatataccta 130  Q
    |||||||||||| ||| |||||||||||||||||||  ||| |||||||||||    
T  22375924 tggggtagccaaatatatattattaggggtagctaaacataaaaatataccta 22375976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 130
Target Start/End: Original strand, 23237540 - 23237596
Alignment:
Q  74 aacttggggtagccaactatgtattattaggggtagctaagtatacaaatataccta 130  Q
    ||||||||| |||||| ||| |||||||||||||||||||  ||| |||||||||||    
T  23237540 aacttggggcagccaaatatatattattaggggtagctaaacataaaaatataccta 23237596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 130
Target Start/End: Original strand, 39606320 - 39606376
Alignment:
Q  74 aacttggggtagccaactatgtattattaggggtagctaagtatacaaatataccta 130  Q
    |||||| ||||||||| ||| |||||||||||||||||||  ||| |||||||||||    
T  39606320 aacttgaggtagccaaatatatattattaggggtagctaaacataaaaatataccta 39606376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 130
Target Start/End: Original strand, 54508597 - 54508649
Alignment:
Q  78 tggggtagccaactatgtattattaggggtagctaagtatacaaatataccta 130  Q
    |||||||||||| ||| |||||||||||||||||||  ||| |||||||||||    
T  54508597 tggggtagccaaatatatattattaggggtagctaaacataaaaatataccta 54508649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 127
Target Start/End: Original strand, 43892879 - 43892933
Alignment:
Q  73 aaacttggggtagccaactatgtattattaggggtagctaagtatacaaatatac 127  Q
    |||||||||| ||| || ||| ||||||||||||||||||| |||| ||||||||    
T  43892879 aaacttggggcagctaaatatatattattaggggtagctaaatataaaaatatac 43892933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 130
Target Start/End: Original strand, 32824618 - 32824679
Alignment:
Q  69 aataaaacttggggtagccaactatgtattattaggggtagctaagtatacaaatataccta 130  Q
    ||||||| ||||| ||||||| ||| ||||| ||||||||| ||| |||| |||||||||||    
T  32824618 aataaaatttgggatagccaaatatttattactaggggtagttaaatataaaaatataccta 32824679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 130
Target Start/End: Complemental strand, 46721932 - 46721871
Alignment:
Q  69 aataaaacttggggtagccaactatgtattattaggggtagctaagtatacaaatataccta 130  Q
    ||||||| |||||||||| || ||| |||||||||||||||||||  ||| |||||| ||||    
T  46721932 aataaaatttggggtagctaaatatatattattaggggtagctaaaaataaaaatatcccta 46721871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 141
Target Start/End: Complemental strand, 20618811 - 20618747
Alignment:
Q  77 ttggggtagccaactatgtattattaggggtagctaagtatacaaatatacctaattattcaata 141  Q
    |||||||||||||  || ||||||||||||||||| | || | ||||||||||| | ||||||||    
T  20618811 ttggggtagccaaacatatattattaggggtagcttaatacaaaaatatacctactcattcaata 20618747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 130
Target Start/End: Original strand, 34021334 - 34021386
Alignment:
Q  78 tggggtagccaactatgtattattaggggtagctaagtatacaaatataccta 130  Q
    |||||||||||| ||| || ||||||||||||||||  ||| |||||||||||    
T  34021334 tggggtagccaaatatatactattaggggtagctaaacataaaaatataccta 34021386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 69 - 130
Target Start/End: Complemental strand, 46937 - 46876
Alignment:
Q  69 aataaaacttggggtagccaactatgtattattaggggtagctaagtatacaaatataccta 130  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||| |||| |||||||||||    
T  46937 aataaaacttggggtagccaaatatatattattaggggtagctaaatataaaaatataccta 46876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 77 - 130
Target Start/End: Complemental strand, 15057 - 15004
Alignment:
Q  77 ttggggtagccaactatgtattattaggggtagctaagtatacaaatataccta 130  Q
    |||||||||| || ||| ||||||||||||||||||| |||| |||||||||||    
T  15057 ttggggtagctaaatatatattattaggggtagctaattataaaaatataccta 15004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 69 - 130
Target Start/End: Complemental strand, 3886203 - 3886142
Alignment:
Q  69 aataaaacttggggtagccaactatgtattattaggggtagctaagtatacaaatataccta 130  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||| |||| |||||||||||    
T  3886203 aataaaacttggggtagccaaatatatattattaggggtagctaaatataaaaatataccta 3886142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 69 - 130
Target Start/End: Original strand, 583311 - 583372
Alignment:
Q  69 aataaaacttggggtagccaactatgtattattaggggtagctaagtatacaaatataccta 130  Q
    |||||||||||||||| |||| ||| ||||||||||||||||||| |||| |||||||||||    
T  583311 aataaaacttggggtaaccaaatatatattattaggggtagctaaatataaaaatataccta 583372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 74 - 130
Target Start/End: Original strand, 7590518 - 7590574
Alignment:
Q  74 aacttggggtagccaactatgtattattaggggtagctaagtatacaaatataccta 130  Q
    |||||||||||||||| ||| |||||||||||||||||||  ||| |||||||||||    
T  7590518 aacttggggtagccaaatatatattattaggggtagctaaacataaaaatataccta 7590574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 73 - 130
Target Start/End: Complemental strand, 13703133 - 13703076
Alignment:
Q  73 aaacttggggtagccaactatgtattattaggggtagctaagtatacaaatataccta 130  Q
    ||||||| |||||| || ||| ||||||||||||||||||| |||| |||||||||||    
T  13703133 aaacttgaggtagctaaatatatattattaggggtagctaaatataaaaatataccta 13703076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 128
Target Start/End: Complemental strand, 34729564 - 34729509
Alignment:
Q  73 aaacttggggtagccaactatgtattattaggggtagctaagtatacaaatatacc 128  Q
    |||||||||||||| || ||| || |||||||||||||||| |||| |||||||||    
T  34729564 aaacttggggtagctaaatatatactattaggggtagctaaatataaaaatatacc 34729509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 130
Target Start/End: Original strand, 29363905 - 29363958
Alignment:
Q  77 ttggggtagccaactatgtattattaggggtagctaagtatacaaatataccta 130  Q
    |||||||||| || ||| |||||||||| |||||||| |||| |||||||||||    
T  29363905 ttggggtagctaaatatatattattaggagtagctaaatataaaaatataccta 29363958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 130
Target Start/End: Original strand, 30386818 - 30386875
Alignment:
Q  73 aaacttggggtagccaactatgtattattaggggtagctaagtatacaaatataccta 130  Q
    ||||||| | |||| || ||| ||||||||||||||||||| |||| |||||||||||    
T  30386818 aaacttgagatagctaaatatatattattaggggtagctaaatataaaaatataccta 30386875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 69 - 130
Target Start/End: Original strand, 45809992 - 45810053
Alignment:
Q  69 aataaaacttggggtagccaactatgtattattaggggtagctaagtatacaaatataccta 130  Q
    ||||||||||||||||||||| ||| ||||||| ||||||||||| |||| |||||||||||    
T  45809992 aataaaacttggggtagccaaatatatattattgggggtagctaaatataaaaatataccta 45810053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 199
Target Start/End: Original strand, 24027002 - 24027052
Alignment:
Q  149 ctctttggggtagccatagccaccccttgagcatgaaagcatccgcccctg 199  Q
    |||||||||||||||||||||||||||||   ||||||||||| |||||||    
T  24027002 ctctttggggtagccatagccaccccttgctgatgaaagcatctgcccctg 24027052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 130
Target Start/End: Original strand, 23333327 - 23333383
Alignment:
Q  74 aacttggggtagccaactatgtattattaggggtagctaagtatacaaatataccta 130  Q
    ||||||| |||||||| ||| |||||||||||||||||||  ||| |||||||||||    
T  23333327 aacttggagtagccaaatatatattattaggggtagctaaacataaaaatataccta 23333383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 128
Target Start/End: Original strand, 48609462 - 48609517
Alignment:
Q  73 aaacttggggtagccaactatgtattattaggggtagctaagtatacaaatatacc 128  Q
    |||||||||||||| || ||| ||||||||||||||| ||| |||| |||||||||    
T  48609462 aaacttggggtagctaaatatatattattaggggtagttaaatataaaaatatacc 48609517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 130
Target Start/End: Original strand, 27571631 - 27571681
Alignment:
Q  80 gggtagccaactatgtattattaggggtagctaagtatacaaatataccta 130  Q
    |||||||||| ||| |||||||||||||||||||  ||| |||||||||||    
T  27571631 gggtagccaaatatatattattaggggtagctaaacataaaaatataccta 27571681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 130
Target Start/End: Original strand, 83978 - 84031
Alignment:
Q  77 ttggggtagccaactatgtattattaggggtagctaagtatacaaatataccta 130  Q
    |||||||| | || ||| ||||||||||||||||||| |||| |||||||||||    
T  83978 ttggggtaactaaatatatattattaggggtagctaaatataaaaatataccta 84031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 130
Target Start/End: Original strand, 33335981 - 33336038
Alignment:
Q  73 aaacttggggtagccaactatgtattattaggggtagctaagtatacaaatataccta 130  Q
    |||||||||||||  || ||| ||||||||||||||||||| |||| | |||||||||    
T  33335981 aaacttggggtagttaaatatatattattaggggtagctaaatataaatatataccta 33336038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 130
Target Start/End: Complemental strand, 41532465 - 41532413
Alignment:
Q  78 tggggtagccaactatgtattattaggggtagctaagtatacaaatataccta 130  Q
    |||||||||||| ||| |||||||||||||||| || ||||  ||||||||||    
T  41532465 tggggtagccaaatatatattattaggggtagccaaatataataatataccta 41532413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 73 - 130
Target Start/End: Original strand, 17769333 - 17769390
Alignment:
Q  73 aaacttggggtagccaactatgtattattaggggtagctaagtatacaaatataccta 130  Q
    |||||||||||||| || ||| ||||||||||||||||||| |||| |||||||||||    
T  17769333 aaacttggggtagctaaatatatattattaggggtagctaaatataaaaatataccta 17769390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 74 - 130
Target Start/End: Complemental strand, 6735969 - 6735913
Alignment:
Q  74 aacttggggtagccaactatgtattattaggggtagctaagtatacaaatataccta 130  Q
    |||||||||||||||| ||| ||||||||| ||||||||| |||| |||||||||||    
T  6735969 aacttggggtagccaaatatatattattagaggtagctaaatataaaaatataccta 6735913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 74 - 130
Target Start/End: Complemental strand, 39570889 - 39570833
Alignment:
Q  74 aacttggggtagccaactatgtattattaggggtagctaagtatacaaatataccta 130  Q
    |||||||||||||||| ||| |||||||||||||||||||  ||| |||||||||||    
T  39570889 aacttggggtagccaaatatatattattaggggtagctaaacataaaaatataccta 39570833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 176
Target Start/End: Original strand, 42092335 - 42092421
Alignment:
Q  90 ctatgtattattaggggtagctaagtatacaaatatacctaattattcaatannnnnnnctctttggggtagccatagccacccctt 176  Q
    ||||||||||||||||||||||||  ||| ||||||||||| | | ||||||        | ||||||||||||||||| |||||||    
T  42092335 ctatgtattattaggggtagctaaacataaaaatatacctactaactcaataaaatttattttttggggtagccatagctacccctt 42092421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 130
Target Start/End: Complemental strand, 21360958 - 21360906
Alignment:
Q  78 tggggtagccaactatgtattattaggggtagctaagtatacaaatataccta 130  Q
    |||||||||||| ||| |||||||||||||||| || ||||  ||||||||||    
T  21360958 tggggtagccaaatatatattattaggggtagccaaatataataatataccta 21360906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 73 - 130
Target Start/End: Complemental strand, 46823593 - 46823536
Alignment:
Q  73 aaacttggggtagccaactatgtattattaggggtagctaagtatacaaatataccta 130  Q
    |||||||||||||| || ||| ||||||||||||||||||| |||| |||||||||||    
T  46823593 aaacttggggtagctaattatatattattaggggtagctaaatataaaaatataccta 46823536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 74 - 130
Target Start/End: Original strand, 22775283 - 22775339
Alignment:
Q  74 aacttggggtagccaactatgtattattaggggtagctaagtatacaaatataccta 130  Q
    |||||||||||||||| ||| |||||||||||||||||||  ||| |||||||||||    
T  22775283 aacttggggtagccaaatatatattattaggggtagctaaacataaaaatataccta 22775339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 74 - 130
Target Start/End: Original strand, 26769844 - 26769900
Alignment:
Q  74 aacttggggtagccaactatgtattattaggggtagctaagtatacaaatataccta 130  Q
    |||||||||||||||| ||| |||||||||||||||||||  ||| |||||||||||    
T  26769844 aacttggggtagccaaatatatattattaggggtagctaaacataaaaatataccta 26769900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 74 - 130
Target Start/End: Complemental strand, 37057582 - 37057526
Alignment:
Q  74 aacttggggtagccaactatgtattattaggggtagctaagtatacaaatataccta 130  Q
    |||||||||||||||| ||| |||||||||||||||||||  ||| |||||||||||    
T  37057582 aacttggggtagccaaatatatattattaggggtagctaaacataaaaatataccta 37057526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 73 - 128
Target Start/End: Original strand, 35238731 - 35238786
Alignment:
Q  73 aaacttggggtagccaactatgtattattaggggtagctaagtatacaaatatacc 128  Q
    ||||||||||||||||| ||| ||||||||||||||||| | |||| |||||||||    
T  35238731 aaacttggggtagccaaatatatattattaggggtagcttaatataaaaatatacc 35238786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 130
Target Start/End: Complemental strand, 37224448 - 37224392
Alignment:
Q  74 aacttggggtagccaactatgtattattaggggtagctaagtatacaaatataccta 130  Q
    |||||||| ||||||| ||| |||||||||||||||||||  ||| |||||||||||    
T  37224448 aacttgggatagccaaatatatattattaggggtagctaaacataaaaatataccta 37224392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 128
Target Start/End: Original strand, 17653344 - 17653399
Alignment:
Q  73 aaacttggggtagccaactatgtattattaggggtagctaagtatacaaatatacc 128  Q
    |||||||||||||| || ||| ||||||||||||||| ||| |||| |||||||||    
T  17653344 aaacttggggtagctaaatatatattattaggggtagttaaatataaaaatatacc 17653399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 128
Target Start/End: Original strand, 30500944 - 30500999
Alignment:
Q  73 aaacttggggtagccaactatgtattattaggggtagctaagtatacaaatatacc 128  Q
    ||||||||||||||||  ||| ||||||||||||||||| | |||| |||||||||    
T  30500944 aaacttggggtagccagatatatattattaggggtagcttaatataaaaatatacc 30500999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University