View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18564_high_2 (Length: 590)
Name: NF18564_high_2
Description: NF18564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18564_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 462; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 16 - 545
Target Start/End: Complemental strand, 27524895 - 27524364
Alignment:
| Q |
16 |
attaagagaaggaattcagtgacataccccataggaggagttttaccaaggccattagcaagaaggtttcttctaagatgctcctcatagttgttgatgt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27524895 |
attaagagaaggaattcagtgacataccccataggaggagttttaccaaggccattagcaagaaggtttcttctaagatgctcctcatagttgttgatgt |
27524796 |
T |
|
| Q |
116 |
tacctagtgatgaagcagtgacacaaaccaaccaaatatgcaagagggtcaccaaaaccaccaccatctcaccaacattttttctccccattttgtactc |
215 |
Q |
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| T |
27524795 |
tacctagtgatgaagcagtgacacaaaccaaccaaatatgcaagagggtcaccaaaaccaccaccatctcaccaacattttttctccccattttgtactc |
27524696 |
T |
|
| Q |
216 |
cctttagcaaccaaccactacacttaacttcagttgcagtgagagtaaaagaaagggtcccgtatctttttataaccnnnnnnncacacataaaatgttc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
27524695 |
cctttagcaaccaaccactacacttaacttcagttgcagtgagagtgaaagaaagggtcccgtatctttttataaccaaaaaaacacacataaaatgttc |
27524596 |
T |
|
| Q |
316 |
ctcctttgtccaaagtcagtgtttttaaatgtgctacgtgtttgactggcaagtcaatgtctgaatattgattgattgatagacttataactggtttttt |
415 |
Q |
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| T |
27524595 |
ctcctttgtccaaagtcagtgtttttaaatgtgctacatgtttgactggcaagtcaatgtctgaatattgattgattgatagacttataactggtttttt |
27524496 |
T |
|
| Q |
416 |
gacaattaagttgcatgagaaaatccaactacaattcaaatgattgacattttat---ttttgttaactcttctactcgagagttttagtaacttgaagt |
512 |
Q |
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| T |
27524495 |
gacaattaagttgcatgagaaaatccaactacaattcaaatga-tgacattttatttattatgttaacccttctactcgagagttttaagaacttgaagt |
27524397 |
T |
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| Q |
513 |
tcggtcatgaggcaagtcaatgttaggaaagta |
545 |
Q |
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| T |
27524396 |
tcggtcacgaggcaagtcaatgttaggaaagta |
27524364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 16 - 186
Target Start/End: Complemental strand, 27530480 - 27530313
Alignment:
| Q |
16 |
attaagagaaggaattcagtgacataccccataggaggagttttaccaaggccattagcaagaaggtttcttctaagatgctcctcatagttgttgatgt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||| | || ||| |
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| T |
27530480 |
attaagagaaggaattcagtgacataccccataggaggagttttaccaagtccattagcaagaaggtttcttctgagatgctctccatcatagt---tgt |
27530384 |
T |
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| Q |
116 |
tacctagtgatgaagcagtgacacaaaccaaccaaatatgcaagagggtcaccaaaaccaccaccatctca |
186 |
Q |
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| T |
27530383 |
tccctaatgaagaagcagtgacacaaaccaaacaaacatgcaaaagggtcaccaaaactaccaccatctca |
27530313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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