View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18564_high_4 (Length: 363)
Name: NF18564_high_4
Description: NF18564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18564_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 26387910 - 26388250
Alignment:
| Q |
1 |
tatactcattttagagttagttaatttactagtttagcatgagaatgccatttattgtttgatatgagaatgttattcattgatgattaaattcttggag |
100 |
Q |
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| T |
26387910 |
tatactcattttaaagttagttaatgtactagtttagtatgagaatgccatttattgtttgatatgagaatgttattcattgatgattaaattcttggag |
26388009 |
T |
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| Q |
101 |
ctagaggcattaattgtgtgcagcaatacatgttgctgctgccattacattagtttgtgttggtttattgctactggctagttgttggtttatccatatc |
200 |
Q |
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| T |
26388010 |
ctagacgcattaattgtgtgcagcaataca------tgctgccattacattagtttgtgttgctttattgctac--------tgttgg-ttatccatatc |
26388094 |
T |
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| Q |
201 |
agaagatacattcaagtcactaccaccc-nnnnnnnnngctactcttcccctctgtccattgaccatgtatcattggagattgattttatacttgttttt |
299 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26388095 |
agaagatacattcaagtcactaccacccttttttttttgctactcttcccctctgtccattgaccatgtatcattggagattgattttatacttgttttt |
26388194 |
T |
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| Q |
300 |
ggtttgtcctcaacagtgaagattggagacataattggttttttagcatattcttc |
355 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
26388195 |
ggtttgtcctcaacagtgaagattggagacataattggttttttggcatattcttc |
26388250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 26389178 - 26389214
Alignment:
| Q |
1 |
tatactcattttagagttagttaatttactagtttag |
37 |
Q |
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||||||||||||||||||||||| | ||||||||||| |
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| T |
26389178 |
tatactcattttagagttagttagtgtactagtttag |
26389214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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