View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18564_high_8 (Length: 250)
Name: NF18564_high_8
Description: NF18564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18564_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 1696576 - 1696824
Alignment:
| Q |
1 |
attttttggttgggaagttgatgtgagatgccataacattagatagccattactagttcttacatgaccactgatctgcttgaaaaatgag-------nn |
93 |
Q |
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| T |
1696576 |
atttttaggttgggaagttgatatgagatgccataacattagatagccattactggttcttacatgaccactgatctgcttgaaaaatgagtttttttta |
1696675 |
T |
|
| Q |
94 |
nnnnnnnnaacacaaacctgcttgaaactgttaatttttggccttataagcattttcttacacaaa--tgcatgatattgatatgcatgctcatcaataa |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |
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| T |
1696676 |
ttttttttaacacaaacctgcttgaaactgttaatttttggccttataagcattttcttacacaaacctgca------tgatatgcatgctcatcaataa |
1696769 |
T |
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| Q |
192 |
gggtattgatgaaatgtacttagtaaatagttgatatgcatgcagtataatctac |
246 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
1696770 |
gggtattgatgaaatgtacttagtaaatagttgatatgcatgcagaataatctac |
1696824 |
T |
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