View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18564_low_1 (Length: 736)
Name: NF18564_low_1
Description: NF18564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18564_low_1 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 616; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 616; E-Value: 0
Query Start/End: Original strand, 1 - 723
Target Start/End: Original strand, 3675434 - 3676153
Alignment:
| Q |
1 |
aacttcacaagatgtggatgacttagttgtccaagaaatataatctctgcctagaaaataaaaatatgttccaaacaacannnnnnnnnnnnnnnnnnnn |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
3675434 |
aacttcacaagatgtggatgacttagttgtccaagaaatataatctctgcctagaaaataaaaatatgttcaaaacaacatttttttagatatatttttt |
3675533 |
T |
|
| Q |
101 |
nccacaaaaattgtggtattttgtcatggaaaaaagtaatcttatagcatatgtttggttcggcaatgaaattcataaaatcccgatgatccatcgtgat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
3675534 |
-ccacaaaaattgtggtattttgtcatggaaaaaagtaatctta--gcatatgtttggttcggcaatgaaattcataaaattccgatgatccatcgtgat |
3675630 |
T |
|
| Q |
201 |
tttgacaaaaattatactttaaagcttcaacaaaattatagtgaaaccgtaattttgctcaatcaattgccaatccaaacatacgcttcgtaaactaaaa |
300 |
Q |
| |
|
||||||||||| ||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3675631 |
tttgacaaaaactatactttagagctttaacaaaatcatagtgaaaccgtaattttgctcaatcaattgccaatccaaacatacgcttcgtaaactaaaa |
3675730 |
T |
|
| Q |
301 |
gggtgcatcagaaagctaaccagccactctctatgaccttgcaagccatccaagtccaaacatttaacagctacagtttgagcctttaacccttgtctaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3675731 |
gggtgcatcagaaagctaaccagccactctctatgaccttgcaagccatccaagtccaaacatttaacagctacagtttgagcctttaacccttgtctaa |
3675830 |
T |
|
| Q |
401 |
gtttatcatcaacaaaacccttataaacaggtccaaatccaccttcacctaacatattactccatgagaaataatgtgttgcttcttttagctcctcaag |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
3675831 |
gtttatcatcaacaaaacccttataaacaggtccaaatccaccttcacctaacatattactccatgagaaattatgtgttgcttcttttagctcctcaag |
3675930 |
T |
|
| Q |
501 |
tgtgaatgcatgaagtttagaaccagcaaaagaaactgaaagatcttcaatagcttgacttgaacttgaattgcttatatctgataaacatagtctttgc |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3675931 |
tgtgaatgcatgaagtttagaaccagcaaaagaaactgaaagatcttcaatagcttgacttgaacttgaattgcttatatctgataaacatagtctttgc |
3676030 |
T |
|
| Q |
601 |
aaagaaccttgttttagaacatgtttctctgattcctccaaagggtatttactcttgtaacaatttaggatcaagatcatagacttccatgttatctttt |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3676031 |
aaagaaccttgttttagaacatgtttctctgattcctccaaagggtatttactcttgtaacaatttaggatcaagatcatagacttccatgttatctttt |
3676130 |
T |
|
| Q |
701 |
tagtagtagtcatctagaatttg |
723 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
3676131 |
tagtagtagtcatctagaatttg |
3676153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 232
Target Start/End: Complemental strand, 3078969 - 3078928
Alignment:
| Q |
191 |
ccatcgtgattttgacaaaaattatactttaaagcttcaaca |
232 |
Q |
| |
|
||||| |||||||||||||||||| ||||| ||||||||||| |
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|
| T |
3078969 |
ccatcatgattttgacaaaaattacactttgaagcttcaaca |
3078928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 115; Significance: 5e-58; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 310 - 703
Target Start/End: Complemental strand, 48553024 - 48552628
Alignment:
| Q |
310 |
agaaagctaaccagccactctctatgaccttgcaagccatccaagtccaaacatttaacagctacagtttgagcctttaacccttgtctaagtttatcat |
409 |
Q |
| |
|
||||| |||||||||||||| || |||||||| |||||||||||| | | ||| ||||| | || ||||||||| || || ||||| |||||||||| |
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|
| T |
48553024 |
agaaaactaaccagccactccctgtgaccttgtgagccatccaagttgagtcgtttgacagcaataggttgagccttcaaaccatgtctgagtttatcat |
48552925 |
T |
|
| Q |
410 |
caacaaaacccttataaacaggtccaaatccaccttcacctaacatattactccatgagaaataatgtgttgcttcttttagctcctcaagtgtgaatgc |
509 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||| | || |||||||| ||| |||| ||||||||||||| |||||||||||||||| |||| |
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|
| T |
48552924 |
caacaaaacccttatacacaggtccaaaaccaccttcaccaagcaaattactccttgaaaaattatgtgttgcttctcttagctcctcaagtgtaaatgt |
48552825 |
T |
|
| Q |
510 |
atgaagtttagaaccagcaaaagaaactgaaagatcttcaatagcttg---acttgaacttgaattgcttatatctgataaacatagtctttgcaaagaa |
606 |
Q |
| |
|
| ||| || |||||||| | |||| |||||||| ||||||||||| | | || || ||| |||||||||| ||||| | || ||||| |||||| |
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| T |
48552824 |
gtaaagctttgaaccagctagtgaaatggaaagatcctcaatagcttgagtagtagagctagaaatgcttatatcagataagcttaccctttggaaagaa |
48552725 |
T |
|
| Q |
607 |
ccttgttttagaacatgtttctctgattcctccaaagggtatttactcttgtaacaatttaggatcaagatcatagacttccatgttatctttttag |
703 |
Q |
| |
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|||||||||| ||| | ||| |||| ||| || || | |||||| ||||||||||| || |||||||| |||||||||||||| |||||||||| |
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|
| T |
48552724 |
ccttgttttaaaacctttttttctggttcttctaatgagtattttgtcttgtaacaacctaagatcaagacaatagacttccatgtaatctttttag |
48552628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 48553366 - 48553314
Alignment:
| Q |
1 |
aacttcacaagatgtggatgacttagttgtccaagaaatataatctctgccta |
53 |
Q |
| |
|
||||| |||||||||||||| || || |||||||||||||||||||||||||| |
|
|
| T |
48553366 |
aacttgacaagatgtggatgtctaagctgtccaagaaatataatctctgccta |
48553314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 364 - 449
Target Start/End: Original strand, 10845900 - 10845985
Alignment:
| Q |
364 |
ttaacagctacagtttgagcctttaacccttgtctaagtttatcatcaacaaaacccttataaacaggtccaaatccaccttcacc |
449 |
Q |
| |
|
|||||||| |||| ||||||||| || |||||||||| |||||||||| | ||||||||| ||||| |||||| ||||||||||| |
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|
| T |
10845900 |
ttaacagcaacaggttgagccttcaaaccttgtctaaaattatcatcaaaataacccttatgaacagttccaaaaccaccttcacc |
10845985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 238
Target Start/End: Complemental strand, 1573965 - 1573924
Alignment:
| Q |
197 |
tgattttgacaaaaattatactttaaagcttcaacaaaatta |
238 |
Q |
| |
|
|||||||||||||| |||||||||||||||| | |||||||| |
|
|
| T |
1573965 |
tgattttgacaaaagttatactttaaagctttatcaaaatta |
1573924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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