View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18564_low_11 (Length: 211)
Name: NF18564_low_11
Description: NF18564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18564_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 17 - 196
Target Start/End: Complemental strand, 6287249 - 6287075
Alignment:
| Q |
17 |
tattgattttaaaataaggtgaccaactccataaagtggtgacggtttccaaaccaaaatgttatttattt--annnnnnnngcaattttatttgtgact |
114 |
Q |
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| T |
6287249 |
tattgattttaaaataaggtgaccaactccataaagtggtgacggtttccaaaccaaaatgttattttttttatttttttttgcaattttatttgtgact |
6287150 |
T |
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| Q |
115 |
tttcaaataaaggtattactttcgaaatagtggaaagcatctcgtaggttttgatcccatgagttatatgttggatttattt |
196 |
Q |
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| T |
6287149 |
tttcaaataaagg-------ttcgaaatagtggaaagcatctcgtaggttttgatcccatgagttatatgttggatttattt |
6287075 |
T |
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