View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18564_low_5 (Length: 360)
Name: NF18564_low_5
Description: NF18564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18564_low_5 |
 | |
|
| [»] chr3 (4 HSPs) |
| |
|
| [»] chr5 (1 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 344; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 3140073 - 3139714
Alignment:
| Q |
1 |
atatcattcattgatgaagccaaaattacatccgtaattatttctaatttaccaaatttgcttctcggtttgaaatcaaatttgaagtacatcaaaactg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3140073 |
atatcattcattgatgaagccaaaattacatccgtaattatttctaatttaccaaatttgcttctcggtttgaaatcaaatttgaagtacatcaaaactg |
3139974 |
T |
|
| Q |
101 |
tgttgtactaataccactcatctaatatagaatatttgagtaattaaacacacgcattataatttaaatcagtttaggaaggtaatgatattcaggcaca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3139973 |
tgttgtactaataccactcatctaatatagaatatttgagtaattaaccacacgcattatagtttaaatcagtttaggaaggtaatgatattcaggcaca |
3139874 |
T |
|
| Q |
201 |
aatcaagcagtgtataccttccatacatcgtttcaaatttcaatcatcattgctattgtaattataattcaaataataacagcaaaatatgcatcatata |
300 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3139873 |
aatcaagcagtgcataccttccatacatcgtttcaaatttcaatcattattgctattgtaattataattcaaataataacagcaaaatatgcatcatata |
3139774 |
T |
|
| Q |
301 |
tcttttttccttattcataaagatatttgcattaactctaaatattttttaaataaataa |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3139773 |
tcttttttccttattcataaagatatttgcattaactctaaatattttttaaataaataa |
3139714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 196 - 329
Target Start/End: Complemental strand, 3157646 - 3157513
Alignment:
| Q |
196 |
gcacaaatcaagcagtgtataccttccatacatcgtttcaaatttcaatcatcattgctattgtaattataattcaaataataacagcaa----aatatg |
291 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| || |||| || | | |||||||||||||||||||||||||||| || || |||||| |
|
|
| T |
3157646 |
gcacaaatcaagcagtgcataccttccatacatcgtttaaactttcgat--acttagctattgtaattataattcaaataataa-agtaaaattaatatg |
3157550 |
T |
|
| Q |
292 |
catcatatatcttttttccttattcataaagatatttg |
329 |
Q |
| |
|
||||| |||| || |||||||||||||||||||||||| |
|
|
| T |
3157549 |
catcagatat-ttctttccttattcataaagatatttg |
3157513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 335
Target Start/End: Original strand, 3166756 - 3166840
Alignment:
| Q |
252 |
gctattgtaattataattcaaataataacag--caaaatatgcatcatatatcttttttccttattcataaagatatttgcattaa |
335 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||||||||||| || | | ||||||||| ||||||||||||||||||| |
|
|
| T |
3166756 |
gctattataattataattcaaataataacagcacaaaatatgcatgtgat-ttatgcttccttatttataaagatatttgcattaa |
3166840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 360
Target Start/End: Original strand, 2022377 - 2022425
Alignment:
| Q |
311 |
ttattcataaagatatttgcattaactctaaatattttttaaataaataa |
360 |
Q |
| |
|
||||| |||||||||||| ||||||||| |||||||||| |||||||||| |
|
|
| T |
2022377 |
ttatttataaagatatttacattaactc-aaatatttttaaaataaataa |
2022425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 167 - 241
Target Start/End: Original strand, 23851178 - 23851252
Alignment:
| Q |
167 |
aatcagtttaggaaggtaatgatattcaggcacaaatcaagcagtgtataccttccatacatcgtttcaaatttc |
241 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||||||||||||| |||| | ||||||||||||||| |||| |
|
|
| T |
23851178 |
aatcagtttaggaagacaatgatatttaggcacaaatcaagcagtgcatacatgtcatacatcgtttcaactttc |
23851252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 332
Target Start/End: Original strand, 23853464 - 23853536
Alignment:
| Q |
253 |
ctattgtaattataattcaaataataacagcaaaatatgcatcatatatcttttttccttattcataaagatatttgcat |
332 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||||| |||||| ||| | |||||||||||||||||||||| |
|
|
| T |
23853464 |
ctattgtaattataattcatataataa------aatatgcatcagatatctctttgc-ttattcataaagatatttgcat |
23853536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 284 - 339
Target Start/End: Original strand, 23851618 - 23851672
Alignment:
| Q |
284 |
aaaatatgcatcatatatcttttttccttattcataaagatatttgcattaactct |
339 |
Q |
| |
|
||||||||||||| |||||| ||| ||||||||| ||||||| ||||||||||||| |
|
|
| T |
23851618 |
aaaatatgcatcagatatctcttt-ccttattcaaaaagataattgcattaactct |
23851672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 23851084 - 23851140
Alignment:
| Q |
22 |
aaaattacatccgtaattatttctaatttaccaaatttgcttctcggtttgaaatca |
78 |
Q |
| |
|
|||||||||||||||||| |||| || |||| | ||||||||||| |||||||||| |
|
|
| T |
23851084 |
aaaattacatccgtaattgtttccaagttacttattttgcttctcgatttgaaatca |
23851140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 23853216 - 23853272
Alignment:
| Q |
22 |
aaaattacatccgtaattatttctaatttaccaaatttgcttctcggtttgaaatca |
78 |
Q |
| |
|
|||| ||||||||||||| |||| || ||||| | ||||| |||||||||||||||| |
|
|
| T |
23853216 |
aaaagtacatccgtaattgtttccaagttacctattttgcctctcggtttgaaatca |
23853272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 360
Target Start/End: Original strand, 1744003 - 1744064
Alignment:
| Q |
298 |
atatcttttttccttattcataaagatatttgcattaactctaaatattttttaaataaataa |
360 |
Q |
| |
|
|||||| |||| ||||||||| ||||||||||||||||||| || ||||| ||||||||||| |
|
|
| T |
1744003 |
atatctcttttacttattcatgaagatatttgcattaactc-aacaattttctaaataaataa |
1744064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 360
Target Start/End: Complemental strand, 9020915 - 9020868
Alignment:
| Q |
312 |
tattcataaagatatttgcattaactctaaatattttttaaataaataa |
360 |
Q |
| |
|
||||| |||||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
9020915 |
tattcttaaagatatttgcattgacta-aaatattttttaaataaataa |
9020868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University