View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18564_low_6 (Length: 305)
Name: NF18564_low_6
Description: NF18564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18564_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 21 - 125
Target Start/End: Original strand, 7962306 - 7962415
Alignment:
| Q |
21 |
tgagagtcggatgagggcgattacttgtttactcctt-----tccaacagtccattttctaactagagagtattctctggaataaactaaattcaatgat |
115 |
Q |
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| T |
7962306 |
tgagagtcggatgagggcgattacttctttactccttgatattccaacagtccattttctaactagagagtattctctggaataaaccaaattcaatgat |
7962405 |
T |
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| Q |
116 |
ttcaccccaa |
125 |
Q |
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| T |
7962406 |
ttcaccccaa |
7962415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 131 - 229
Target Start/End: Original strand, 7962596 - 7962694
Alignment:
| Q |
131 |
tgtccttcaatgcaaatgtcgcctcacgatgatctttgattagttgacctcctacccatctatatgtaccaagtattaaatcttctagattgagacggt |
229 |
Q |
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| T |
7962596 |
tgtcctgcaatgcagtcgtcgtctcacgataatctttgatttgttgacctcctacccatctatatttaccaagtattaaatcttctagattgagacggt |
7962694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 191 - 295
Target Start/End: Original strand, 7973449 - 7973552
Alignment:
| Q |
191 |
tatatgtaccaagtattaaatcttctagattgagacggttctttaaacaaggaaacatgaacaagaatatcacatgtgtaaacttcttcacatgcacagc |
290 |
Q |
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| T |
7973449 |
tatatttaccaagtgttacagattctggattgagacggt-ctttaaacaaggaaacaagaacaggagtatcagaggtgtaaacttcttcacatgcacaac |
7973547 |
T |
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| Q |
291 |
ctatg |
295 |
Q |
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||||| |
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| T |
7973548 |
ctatg |
7973552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 57 - 125
Target Start/End: Complemental strand, 47292975 - 47292907
Alignment:
| Q |
57 |
ttccaacagtccattttctaactagagagtattctctggaataaactaaattcaatgatttcaccccaa |
125 |
Q |
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| T |
47292975 |
ttccaacagtccattttctaactcgagagtattttctgaaatcaaccatacacaatgatttcaccccaa |
47292907 |
T |
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