View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18564_low_7 (Length: 300)

Name: NF18564_low_7
Description: NF18564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18564_low_7
NF18564_low_7
[»] chr8 (3 HSPs)
chr8 (24-186)||(37233815-37233977)
chr8 (179-292)||(37233370-37233483)
chr8 (100-190)||(37234028-37234118)
[»] chr3 (3 HSPs)
chr3 (58-242)||(31092423-31092606)
chr3 (29-139)||(29841003-29841113)
chr3 (122-190)||(33702009-33702076)
[»] chr7 (3 HSPs)
chr7 (43-190)||(44137644-44137791)
chr7 (43-141)||(18776215-18776311)
chr7 (53-106)||(45377616-45377669)
[»] chr2 (1 HSPs)
chr2 (43-190)||(10127202-10127348)
[»] chr1 (4 HSPs)
chr1 (28-177)||(52076011-52076158)
chr1 (53-110)||(26304573-26304630)
chr1 (115-187)||(31849414-31849486)
chr1 (118-190)||(27574687-27574760)
[»] chr4 (2 HSPs)
chr4 (117-180)||(21698376-21698439)
chr4 (100-174)||(7068308-7068382)
[»] chr5 (2 HSPs)
chr5 (58-160)||(15418354-15418456)
chr5 (115-190)||(23228061-23228137)
[»] chr6 (1 HSPs)
chr6 (115-190)||(3386341-3386417)


Alignment Details
Target: chr8 (Bit Score: 151; Significance: 6e-80; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 24 - 186
Target Start/End: Complemental strand, 37233977 - 37233815
Alignment:
Q  24 ggacatgcacaactcattgggtagaatgtaaaacatgttttctccattcttttgagtttactcaaatagactaataaatcctttcactaagtaagacact 123  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  37233977 ggacatgcacaactcattgggtagaatgtaaaatatgttttctccattcttttgagtttactcaaatagactaataaatcctttcaccaagtaagacact 37233878  T
Q  124 tcaatgccaatattttcataaacttcaatggattaaacttaaatccaacaacataatgataca 186  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  37233877 tcaatgccaatattttcataaacttcaatgaattaaacttaaatccaacaacataatgataca 37233815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 179 - 292
Target Start/End: Complemental strand, 37233483 - 37233370
Alignment:
Q  179 atgatacaacattctcgaagaaaacataatattacgacataataaaacacaacataatagatcactcgtcattcttgaacttcattaatttgggtgaatt 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  37233483 atgatacaacattctcgaagaaaacataatattacgacataataaaacacaacataatagatcactcgtcattcttgaacttcattaatttgggtgagtt 37233384  T
Q  279 ggacactttcatct 292  Q
    ||||||||||||||    
T  37233383 ggacactttcatct 37233370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 100 - 190
Target Start/End: Original strand, 37234028 - 37234118
Alignment:
Q  100 aatcctttcactaagtaagacacttcaatgccaatattttcataaacttcaatggattaaacttaaatccaacaacataatgatacaacat 190  Q
    ||||||| |||| ||||||||| ||||||| ||| ||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||    
T  37234028 aatccttacacttagtaagacatttcaatgtcaacattttcataaacttctatgaattaaacttaaatccaacaatataatgatacaacat 37234118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 58 - 242
Target Start/End: Complemental strand, 31092606 - 31092423
Alignment:
Q  58 atgttttctccattcttttgagtttactcaaatagactaataaatcctttcactaagtaagacacttcaatgccaatattttcataaacttcaatggatt 157  Q
    ||||| ||||||||||||||||||| ||||||  ||||  ||||||||| ||||||| |||||||||||||| ||| ||||||||||||||  ||| |||    
T  31092606 atgttctctccattcttttgagttttctcaaagtgactggtaaatccttacactaagaaagacacttcaatgtcaacattttcataaacttgcatgaatt 31092507  T
Q  158 aaacttaaatccaacaacataatgatacaacattctcgaagaaaacataatattacgacataataaaacacaacataatagatca 242  Q
    ||||||||||||||||||| ||| || |||||||||  || ||||||||||| ||| ||||||||||||||||||||||||||||    
T  31092506 aaacttaaatccaacaacaaaataattcaacattctttaa-aaaacataataatacaacataataaaacacaacataatagatca 31092423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 29 - 139
Target Start/End: Complemental strand, 29841113 - 29841003
Alignment:
Q  29 tgcacaactcattgggtagaatgtaaaacatgttttctccattcttttgagtttactcaaatagactaataaatcctttcactaagtaagacacttcaat 128  Q
    |||| |||||||| ||||| || ||||||||||| |||| | ||||||||||||  ||||| ||| || ||||| ||| |||||||||||||||||||||    
T  29841113 tgcaaaactcattaggtagcatataaaacatgttctctcgactcttttgagttttttcaaagagagtagtaaattcttacactaagtaagacacttcaat 29841014  T
Q  129 gccaatatttt 139  Q
    ||||| |||||    
T  29841013 gccaacatttt 29841003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 190
Target Start/End: Complemental strand, 33702076 - 33702009
Alignment:
Q  122 cttcaatgccaatattttcataaacttcaatggattaaacttaaatccaacaacataatgatacaacat 190  Q
    |||||||||||| ||||||| ||||||| ||| |||||| | |||| ||||| |||||| |||||||||    
T  33702076 cttcaatgccaacattttcaaaaacttccatgaattaaa-taaaattcaacatcataataatacaacat 33702009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 4e-35; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 43 - 190
Target Start/End: Complemental strand, 44137791 - 44137644
Alignment:
Q  43 ggtagaatgtaaaacatgttttctccattcttttgagtttactcaaatagactaataaatcctttcactaagtaagacacttcaatgccaatattttcat 142  Q
    ||||||||  ||||||  || ||||||||||||||| ||| |||||| | |||| ||| ||||| |||||||||||||||||||||||||| ||||||||    
T  44137791 ggtagaatacaaaacactttctctccattcttttgatttttctcaaagaaactagtaattccttacactaagtaagacacttcaatgccaacattttcat 44137692  T
Q  143 aaacttcaatggattaaacttaaatccaacaacataatgatacaacat 190  Q
    ||||| | ||| |||||||||||||| ||||| |||||||||||||||    
T  44137691 aaactcccatgaattaaacttaaatcaaacaaaataatgatacaacat 44137644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 141
Target Start/End: Complemental strand, 18776311 - 18776215
Alignment:
Q  43 ggtagaatgtaaaacatgttttctccattcttttgagtttactcaaatagactaataaatcctttcactaagtaagacacttcaatgccaatattttca 141  Q
    |||| ||| ||||||||||   |||||||||||||| |||  || ||||||||| |||||| || ||||||||||||||||| |||| ||| |||||||    
T  18776311 ggtacaatataaaacatgtccactccattcttttgatttt--tcgaatagactagtaaatcattacactaagtaagacacttaaatgtcaacattttca 18776215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 106
Target Start/End: Complemental strand, 45377669 - 45377616
Alignment:
Q  53 aaaacatgttttctccattcttttgagtttactcaaatagactaataaatcctt 106  Q
    |||||||||| | ||||||||||||||||| |||||| |||| |||||||||||    
T  45377669 aaaacatgttctatccattcttttgagttttctcaaaaagacaaataaatcctt 45377616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 43 - 190
Target Start/End: Original strand, 10127202 - 10127348
Alignment:
Q  43 ggtagaatgtaaaacatgttttctccattcttttgagtttactcaaatagactaataaatcctttcactaagtaagacacttcaatgccaatattttcat 142  Q
    ||||||||  |||||||||||||||||||||||||||||| |||||| |||||| ||||| ||| |||||||||| |||||| |||||||||||||  ||    
T  10127202 ggtagaatacaaaacatgttttctccattcttttgagttttctcaaagagactagtaaattcttacactaagtaaaacactttaatgccaatatttatat 10127301  T
Q  143 aaacttcaatggattaaacttaaatccaacaacataatgatacaacat 190  Q
    ||||||| ||| |||  ||| |||| |||| ||||||| |||||||||    
T  10127302 aaacttccatgaatt-gactaaaattcaaccacataataatacaacat 10127348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 28 - 177
Target Start/End: Complemental strand, 52076158 - 52076011
Alignment:
Q  28 atgcacaactcattgggtagaatgtaaaacatgttttctccattcttttgagtttactcaaatagactaataaatcctttcactaagtaagacacttcaa 127  Q
    ||||| |||||||| ||||||||  |||||||||| |||| |||||||||||||| || ||| |||||| | |||||||  |||||| ||||||||||||    
T  52076158 atgcataactcattaggtagaatacaaaacatgttctctcaattcttttgagttttctaaaagagactagtgaatccttatactaagcaagacacttcaa 52076059  T
Q  128 tgccaatattttcataaacttcaatggattaaacttaaatccaacaacat 177  Q
    ||  || ||||||||||||||  ||| ||| | || ||||||||||||||    
T  52076058 tg-taacattttcataaacttatatgaatt-agctaaaatccaacaacat 52076011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 110
Target Start/End: Original strand, 26304573 - 26304630
Alignment:
Q  53 aaaacatgttttctccattcttttgagtttactcaaatagactaataaatcctttcac 110  Q
    |||||||||| |||||||| |||||||||| |||||| || ||| |||||||||||||    
T  26304573 aaaacatgttctctccattattttgagttttctcaaagaggctagtaaatcctttcac 26304630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 187
Target Start/End: Complemental strand, 31849486 - 31849414
Alignment:
Q  115 taagacacttcaatgccaatattttcataaacttcaatggattaaacttaaatccaacaacataatgatacaa 187  Q
    ||||| |||||||| |||| ||||||| |||   ||||| ||||||||||||||||| || ||||||||||||    
T  31849486 taagaaacttcaataccaacattttcaaaaatgacaatgaattaaacttaaatccaaaaaaataatgatacaa 31849414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 190
Target Start/End: Complemental strand, 27574760 - 27574687
Alignment:
Q  118 gacacttcaatgccaatattttca-taaacttcaatggattaaacttaaatccaacaacataatgatacaacat 190  Q
    |||||||||||||||| ||||||| |||||||| |   |||||||||||||||||||  || ||||||| ||||    
T  27574760 gacacttcaatgccaagattttcagtaaacttctaaaaattaaacttaaatccaacattatgatgataccacat 27574687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 117 - 180
Target Start/End: Complemental strand, 21698439 - 21698376
Alignment:
Q  117 agacacttcaatgccaatattttcataaacttcaatggattaaacttaaatccaacaacataat 180  Q
    |||||||||||| | |||||||||||||||||| |||  |||||||||||||||||||| ||||    
T  21698439 agacacttcaatactaatattttcataaacttccatgagttaaacttaaatccaacaacgtaat 21698376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 174
Target Start/End: Original strand, 7068308 - 7068382
Alignment:
Q  100 aatcctttcactaagtaagacacttcaatgccaatattttcataaacttcaatggattaaacttaaatccaacaa 174  Q
    |||||||  |||||||| ||||||| ||||  |  ||||||| ||||||| ||| ||||||||||||||||||||    
T  7068308 aatccttatactaagtatgacacttaaatgttagcattttcagaaacttccatgaattaaacttaaatccaacaa 7068382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 58 - 160
Target Start/End: Original strand, 15418354 - 15418456
Alignment:
Q  58 atgttttctccattcttttgagtttactcaaatagactaataaatcctttcactaagta--agacacttcaatgccaatattttcataaacttcaatgga 155  Q
    ||||| |||||||||||||||||||  ||||||||||| | ||||| || || ||||||  ||||| ||||||||||| ||||| ||||||||| ||| |    
T  15418354 atgttctctccattcttttgagttt--tcaaatagactgacaaatcattacattaagtataagacatttcaatgccaacatttttataaacttctatgaa 15418451  T
Q  156 ttaaa 160  Q
    |||||    
T  15418452 ttaaa 15418456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 190
Target Start/End: Complemental strand, 23228137 - 23228061
Alignment:
Q  115 taagacacttcaatgccaatattttca-taaacttcaatggattaaacttaaatccaacaacataatgatacaacat 190  Q
    ||||||||||||||||||| ||||||| |||||||| |   |||||||||||| |||||| ||| ||||||| ||||    
T  23228137 taagacacttcaatgccaagattttcactaaacttccaacaattaaacttaaacccaacatcatgatgataccacat 23228061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 190
Target Start/End: Original strand, 3386341 - 3386417
Alignment:
Q  115 taagacacttcaatgccaatattttc-ataaacttcaatggattaaacttaaatccaacaacataatgatacaacat 190  Q
    ||||||||||||||| |||||||||| ||||||||  ||| ||| || |||||||||| | ||| ||||||| ||||    
T  3386341 taagacacttcaatgacaatattttcgataaactttcatgaatttaaattaaatccaatatcatgatgataccacat 3386417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University