View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18565_high_1 (Length: 804)

Name: NF18565_high_1
Description: NF18565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18565_high_1
NF18565_high_1
[»] chr1 (9 HSPs)
chr1 (10-786)||(49687643-49688415)
chr1 (23-786)||(49710360-49711126)
chr1 (10-786)||(49682741-49683516)
chr1 (98-786)||(49714077-49714766)
chr1 (347-786)||(49215347-49215781)
chr1 (27-315)||(49215059-49215347)
chr1 (246-614)||(49728422-49728792)
chr1 (304-723)||(49725058-49725479)
chr1 (398-475)||(11033343-11033420)
[»] chr6 (7 HSPs)
chr6 (100-279)||(30986001-30986180)
chr6 (100-279)||(30992165-30992344)
chr6 (352-503)||(31224434-31224585)
chr6 (352-473)||(31201401-31201522)
chr6 (355-473)||(31189594-31189712)
chr6 (352-422)||(31145587-31145657)
chr6 (352-422)||(31171900-31171970)
[»] chr7 (1 HSPs)
chr7 (439-527)||(33305159-33305247)
[»] scaffold0394 (1 HSPs)
scaffold0394 (433-484)||(2115-2166)
[»] chr4 (1 HSPs)
chr4 (433-484)||(15063368-15063419)


Alignment Details
Target: chr1 (Bit Score: 714; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 714; E-Value: 0
Query Start/End: Original strand, 10 - 786
Target Start/End: Original strand, 49687643 - 49688415
Alignment:
Q  10 aagaatataacacactcttttagaaacatattaggccaaggaggcttcggaagtgtataccaagggaagttaccagatgagtgagttattgcagtgaagg 109  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  49687643 aagaaaataacacactcttttagaaacatattaggccaaggaggcttcggaagtgtataccaagggaagttaccagatgagtgtgttattgcagtgaagg 49687742  T
Q  110 ttttaagtgaatcaaaaggtgatggtgaagatttcattaatgaagttgcgagtatcagtagaacttctcatattaatgttgttaggcttttggggttctg 209  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  49687743 ttttaagtgaatcaaaaggtgacggtgaagatttcattaatgaagttgcgagtatcagtagaacttctcatatcaatgttgttaggcttttggggttctg 49687842  T
Q  210 tttggatggttctaaaaaggcactaatatacgaattcatgtctaatggatctcttgagaagttcatatacgaagagaaaaatccattgaaagatgatcgc 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||     
T  49687843 tttggatggttctaaaaaggcactaatatacgaattcatgtctaatggatatcttgagaagttcatatacgaagagaaaaatccattgaaggatgatcgg 49687942  T
Q  310 caattggattgcaaaacattgtataatattgcagtt-ggcgttgctcgtggactagagtattttcgtagaggctgcaacactagaatcttacattttgac 408  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49687943 caattggattgcaaaacattgtataatattgcagttgggcgttgctcgtggactagagtattttcgtagaggctgcaacactagaatcttacattttgac 49688042  T
Q  409 ataaaacctcataatatattacttgatgaggatttctgcccaaaaaattctgattttggacttgctaaaatatgtctgagaaaagaaagcattgtatcca 508  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49688043 ataaaacctcataatatattacttgatgagaatttctgcccaaaaaattctgattttggacttgctaaaatatgtctgagaaaagaaagcattgtatcca 49688142  T
Q  509 tatttggtgcaaggggaacgccaggatattgctccagagttgttctcccaaaattttggtggggtgtcccataaatcagatgtctacagttatggaatga 608  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49688143 tatttggtgcaaggggaacgccaggatattgctccagagttgttctcccgaaattttggtggggtgtcccataaatcagatgtctacagttatggaatga 49688242  T
Q  609 tggtttaagaaatggttggtcaaagaaagaacatcaaagttgaagtggattgttctagcgatttatattttccacattggatttacaagcgtcttgaatt 708  Q
    ||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49688243 tggt-----aaatggttggtcaaagaaagaacatcaaagttgaagtggattgttctagcgatttatattttccacattggatttacaagcgtcttgaatt 49688337  T
Q  709 gaatcaagatcttggactcaagtctattaaaaatgaaaatgatgaagaaatggtaagaaaaatgacagtggtgagttt 786  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49688338 gaatcaagatcttggactcaagtctattaaaaatgaaaatgatgaagaaatggtaagaaaaatgacagtggtgagttt 49688415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 23 - 786
Target Start/End: Original strand, 49710360 - 49711126
Alignment:
Q  23 actcttttagaaacatattaggccaaggaggcttcggaagtgtataccaagggaagttaccagatgagtgagttattgcagtgaaggttttaagtgaatc 122  Q
    ||||||||||||||| |||||| |||||||| | ||||||||||||| |||||||||||   |||||| |  || |||||||||| |||||||||||| |    
T  49710360 actcttttagaaacaaattaggacaaggagggtacggaagtgtatacaaagggaagttaaatgatgagcgtattgttgcagtgaaagttttaagtgaacc 49710459  T
Q  123 aaaaggtgatggtgaagatttcattaatgaagttgcgagtatcagtagaacttctcatattaatgttgttaggcttttggggttctgtttggatggttct 222  Q
    |||||| || || |||||||| |||||||||||||||||||| ||||||||||| ||| | || |||||||| |||||||||||||||||||||||||||    
T  49710460 aaaaggcgacggcgaagattttattaatgaagttgcgagtattagtagaacttcgcatgtcaacgttgttagacttttggggttctgtttggatggttct 49710559  T
Q  223 aaaaaggcactaatatacgaattcatgtctaatggatctcttgagaagttcatatacgaagagaaaaatccattgaaagatgatcgccaattggattgca 322  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  49710560 aaaaaggcactaatatacgaattcatgcctaatggatctcttgagaagttcatatacgaagagaaaaatccattgaaggatgatcgccagttggattgca 49710659  T
Q  323 aaacattgtataatattgcagttggcgttgctcgtggactagagtattttcgtagaggctgcaacactagaatcttacattttgacataaaacctcataa 422  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||| || |  ||||||||||||||||||||||| |||||||||||||||||||||||    
T  49710660 aaacattgtatgatattgcagttggggttgctcgtggactagagtacttgcacagaggctgcaacactagaatcttgcattttgacataaaacctcataa 49710759  T
Q  423 tatattacttgatga-ggatttctgcccaaaaaattctgattttggacttgctaaaatatgtctgagaaaagaaagcattgtatccatatttggtgcaag 521  Q
    ||||||||| |||||   |||| || ||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  49710760 tatattactagatgattaatttttgtccaaaaatttcagattttggacttgctaaaatatgtctaagaaaagaaagcattgtatcaatatttggtgcaag 49710859  T
Q  522 gggaacgccagg--atattgctccagagttgttctcccaaaattttggtggggtgtcccataaatcagatgtctacagttatggaatgatggtttaagaa 619  Q
    |||||| |||||  ||||||||||||||||||||||   |||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||| |||     
T  49710860 gggaacaccaggatatattgctccagagttgttctctagaaattttggtggggtgtcacataagtcagatgtctacagttacggaatgatggttttagag 49710959  T
Q  620 atggttggtcaaagaaagaacatcaaagttgaagtggattgttctagcgatttatattttccacattggatttacaagcgtcttgaattgaatcaagatc 719  Q
    |||||||||| |||||||||||| || |||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  49710960 atggttggtcgaagaaagaacattaaggttgaagttgattgttctagcgagttatattttccacactggatttacaagcgtcttgaattgaatcaggatc 49711059  T
Q  720 ttggactcaagtctattaaaaatgaaaatgatgaagaaatggtaagaaaaatgacagtggtgagttt 786  Q
    |||||||||||  |||||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  49711060 ttggactcaagagtattaaaaatgaaaatgatgaagaaatggtcagaaaaatgtcagtggtgagttt 49711126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 10 - 786
Target Start/End: Original strand, 49682741 - 49683516
Alignment:
Q  10 aagaatataacacactcttttagaaacatattaggccaaggaggcttcggaagtgtataccaagggaagttaccagatgagtgagttattgcagtgaagg 109  Q
    ||||| |||||| ||||||||||||||| ||||||||||||||| ||||||||||||||| |||||| |||||  |||||| | ||| |||| |||||||    
T  49682741 aagaaaataacaaactcttttagaaacaaattaggccaaggagggttcggaagtgtatacaaagggaggttacgtgatgagcgtgttgttgctgtgaagg 49682840  T
Q  110 ttttaagtgaatcaaaaggtgatggtgaagatttcattaatgaagttgcgagtatcagtagaacttctcatattaatgttgttaggcttttggggttctg 209  Q
    ||||||||||||||||||| || || || |||||||||||||||||||||||||||| ||||||||| ||| | || ||| |||| ||||||||||||||    
T  49682841 ttttaagtgaatcaaaaggcgacggggatgatttcattaatgaagttgcgagtatcaatagaacttcgcatgtcaacgttcttagacttttggggttctg 49682940  T
Q  210 tttggatggttctaaaaaggcactaatatacgaattcatgtctaatggatctcttgagaagttcatatacgaagagaaaaatccattgaaagatgatcgc 309  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||   ||||||||||||||| |||||| ||    
T  49682941 tttggatggttctaaaaaggcactaatatacgaattcatgcttaatggatctcttgagaagttcatatacga---gaaaaatccattgaaggatgatggc 49683037  T
Q  310 caattggattgcaaaacattgtataatattgcagttggcgttgctcgtggactagagtattttcgtagaggctgcaacactagaatcttacattttgaca 409  Q
    |||||||| |||||||  |||||| ||||||| |||||||||||||||||  |||||||  | |  ||||||||||||||||||||||||||||||||||    
T  49683038 caattggaatgcaaaatgttgtatgatattgctgttggcgttgctcgtgggttagagtacatgcacagaggctgcaacactagaatcttacattttgaca 49683137  T
Q  410 taaaacctcataatatattacttgatgaggatttctgcccaaaaaattctgattttggacttgctaaaatatgtctgagaaaagaaagcattgtatccat 509  Q
    ||||||||||||||||||||||||| || ||||| || ||||||| ||| |||||||||||||||||||||||||  |||||||||||||||||||| ||    
T  49683138 taaaacctcataatatattacttgacgatgatttgtgtccaaaaatttcagattttggacttgctaaaatatgtccaagaaaagaaagcattgtatcaat 49683237  T
Q  510 atttggtgcaaggggaacgccaggatat--tgctccagagttgttctcccaaaattttggtggggtgtcccataaatcagatgtctacagttatggaatg 607  Q
    ||||||||||||||| || |||||||||  |||||||||| |||||||   | |||||||||||||||| || |||||||||||||||||||||||||||    
T  49683238 atttggtgcaagggggacaccaggatatattgctccagagctgttctctagacattttggtggggtgtcacacaaatcagatgtctacagttatggaatg 49683337  T
Q  608 atggtttaagaaatggttggtcaaagaaagaacatcaaagttgaagtggattgttctagcgatttatattttccacattggatttacaagcgtcttgaat 707  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  49683338 atggttttagaaatggttggtcgaagaaagaacatcaaagttgaagtggattgttctagcgagttatattttccacattggatctacaagcgtcttgaat 49683437  T
Q  708 tgaatcaagatcttggactcaagtctattaaaaatgaaaatgatgaagaaatggtaagaaaaatgacagtggtgagttt 786  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||| |||||| ||||||||||    
T  49683438 tgaatcaagatcttggactcaagtgtattaaaaatgaaattgatgaagagatggtaagaaagatgacaatggtgagttt 49683516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 98 - 786
Target Start/End: Original strand, 49714077 - 49714766
Alignment:
Q  98 ttgcagtgaaggttttaagtgaatcaaaaggtgatggtgaagatttcattaatgaagttgcgagtatcagtagaacttctcatattaatgttgttaggct 197  Q
    |||| ||||||||||||| |||||| ||||||||  ||||||||||||| || |||||||||||||||||||||||||| ||| | || |||||||| ||    
T  49714077 ttgcggtgaaggttttaaatgaatccaaaggtgacagtgaagatttcatcaacgaagttgcgagtatcagtagaacttcgcatgtcaacgttgttagact 49714176  T
Q  198 tttggggttctgtttggatggttctaaaaaggcactaatatacgaattcatgtctaatggatctcttgagaagttcatatacgaagagaaaaatccattg 297  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||| ||||| ||||| ||||| || ||||||||     
T  49714177 tttggggttctgtttggatggttctaaaaaggcactaatatatgaattcatgcctaatggatcccttgaaaagttaatatatgaagaaaagaatccatta 49714276  T
Q  298 aaagatgatcgccaattggattgcaaaacattgtataatattgcagttggcgttgctcgtggactagagtattttcgtagaggctgcaacactagaatct 397  Q
    | ||| |||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||  ||||||| || |  |||||||| |||||||||||||    
T  49714277 acagacgatcaccaattggattgcaaaacattgtatgatattgcagttggtgttgctcgtgggttagagtacttgcacagaggctgtaacactagaatct 49714376  T
Q  398 tacattttgacataaaacctcataatatattacttgatgaggatttctgcccaaaaaattctgattttggacttgctaaaatatgtctgagaaaagaaag 497  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||| || |||| ||| ||||| |||||||||||| ||||||  |||||||||||    
T  49714377 tacattttgacattaaacctcataatatattacttgatgaagatttctgtcctaaaatttcagatttcggacttgctaaagtatgtccaagaaaagaaag 49714476  T
Q  498 cattgtatccatatttggtgcaaggggaacgccagg--atattgctccagagttgttctcccaaaattttggtggggtgtcccataaatcagatgtctac 595  Q
    ||||||||||||||||| |||  ||||||| |||||  |||||||||||||||||||||||  ||||||||  |||||||| |||||||||||||| ||     
T  49714477 cattgtatccatatttgttgc-gggggaacaccaggatatattgctccagagttgttctccagaaattttgacggggtgtcacataaatcagatgtttat 49714575  T
Q  596 agttatggaatgatggtttaagaaatggttggtcaaagaaagaacatcaaagttgaagtggattgttctagcgatttatattttccacattggatttaca 695  Q
    ||||||||||||||||||| |||||||||||| | |||||||||||| || |||||||| |||||||| ||||| |||||||||||||| ||||||||||    
T  49714576 agttatggaatgatggttttagaaatggttggccgaagaaagaacattaaggttgaagttgattgttccagcgagttatattttccacactggatttaca 49714675  T
Q  696 agcgtcttgaattgaatcaagatcttggactcaagtctattaaaaatgaaaatgatgaagaaatggtaagaaaaatgacagtggtgagttt 786  Q
    ||||||||||||||||||| ||||||| ||| | || |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  49714676 agcgtcttgaattgaatcaggatcttgaactgaggtgtattaaaaatgaaattgatgaagaaatggtaagaaaaatgacagtggtgagttt 49714766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 347 - 786
Target Start/End: Original strand, 49215347 - 49215781
Alignment:
Q  347 gcgttgctcgtggactagagtattttcgtagaggctgcaacactagaatcttacattttgacataaaacctcataatatattacttgatgaggatttctg 446  Q
    |||||||||||||| ||||||| || |  |||||||| |||||||||||||| ||||||||||||| |||||||||||||||||| | ||| ||||| ||    
T  49215347 gcgttgctcgtggattagagtacttgcacagaggctgtaacactagaatcttgcattttgacataagacctcataatatattactagctgatgatttttg 49215446  T
Q  447 cccaaaaaattctgattttggacttgctaaaatatgtctgagaaaagaaagcattgtatccatatttggtgcaaggggaacgccagg--atattgctcca 544  Q
     || |||| ||| ||||||||||||||||||||||| |  ||||||||||| |||| |||| ||||||| ||||| |||||||||||  |||||||||||    
T  49215447 tccgaaaatttcagattttggacttgctaaaatatgcccaagaaaagaaagtattgcatccgtatttggcgcaagaggaacgccaggatatattgctcca 49215546  T
Q  545 gagttgttctcccaaaattttggtggggtgtcccataaatcagatgtctacagttatggaatgatggtttaagaaatggttggtcaaagaaagaacatca 644  Q
    ||||||||||||  | |||||||||||||||| |||||||||||||| || ||||||||||||||||||| |||||||||| ||| |||||||||||| |    
T  49215547 gagttgttctccagacattttggtggggtgtcacataaatcagatgtttatagttatggaatgatggttttagaaatggtttgtcgaagaaagaacatta 49215646  T
Q  645 aagttgaagtggattgttctagcgatttatattttccacattggatttacaagcgtcttgaattgaatcaagatcttggactcaagtctattaaaaatga 744  Q
    | |||||||| |||||       || | |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||    
T  49215647 aggttgaagttgattg-------gagtaatattttccacactggatttacaagcgtcttgaattgaatcaggatcttggactcaggtgtattaaaaatga 49215739  T
Q  745 aaatgatgaagaaatggtaagaaaaatgacagtggtgagttt 786  Q
    || |||||||||||||||||||||||||||||||||||||||    
T  49215740 aattgatgaagaaatggtaagaaaaatgacagtggtgagttt 49215781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 27 - 315
Target Start/End: Original strand, 49215059 - 49215347
Alignment:
Q  27 ttttagaaacatattaggccaaggaggcttcggaagtgtataccaagggaagttaccagatgagtgagttattgcagtgaaggttttaagtgaatcaaaa 126  Q
    ||||||||||| |||||| || ||||| | |||| |||||||| ||||||||||||  |||||| |  |  |||||||||| ||||||||||||||||||    
T  49215059 ttttagaaacaaattaggtcagggagggtacggaggtgtatacaaagggaagttacatgatgagcgtatagttgcagtgaaagttttaagtgaatcaaaa 49215158  T
Q  127 ggtgatggtgaagatttcattaatgaagttgcgagtatcagtagaacttctcatattaatgttgttaggcttttggggttctgtttggatggttctaaaa 226  Q
    || ||||| |||||||| |||||||||||||||||||| ||||||||||| ||| | || |||||||| |||||||||||||||||||||  ||||||||    
T  49215159 ggcgatggcgaagattttattaatgaagttgcgagtattagtagaacttcacatgtcaacgttgttagacttttggggttctgtttggataattctaaaa 49215258  T
Q  227 aggcactaatatacgaattcatgtctaatggatctcttgagaagttcatatacgaagagaaaaatccattgaaagatgatcgccaattg 315  Q
    ||||| ||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||  |||||||||||||||    
T  49215259 aggcattaatatatgaattcatgcctaatggatctcttgagaagttcatatatgaagagaaaaatccattgagggatgatcgccaattg 49215347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 246 - 614
Target Start/End: Original strand, 49728422 - 49728792
Alignment:
Q  246 catgtctaatggatctcttgagaagttcatatacgaagagaaaaatccattgaaagatgatcgccaattggattgcaaaacattgtataatattgcagtt 345  Q
    |||| |||||||||| ||||||||||||||||| ||| | ||| ||||||||||     |||  ||||||  |||||||||  | || ||||||||| ||    
T  49728422 catgcctaatggatcacttgagaagttcatatatgaaaacaaagatccattgaagctcaatcttcaattgagttgcaaaactgtctacaatattgcaatt 49728521  T
Q  346 ggcgttgctcgtggactagagtattttcgtagaggctgcaacactagaatcttacattttgacataaaacctcataatatattacttgatgaggatttct 445  Q
    ||||||||||| ||| |||||||| | |  | ||| ||||| |||| ||| ||||||||||| |||||||||||||||||||| || || || ||||| |    
T  49728522 ggcgttgctcggggattagagtatctgcacaaaggttgcaatactaaaattttacattttgatataaaacctcataatatattgctagacgatgattttt 49728621  T
Q  446 gcccaaaaaattctgattttggacttgctaaaatatgtctgagaaaagaaagcattgtatccatatttggtgcaaggggaacgccaggat--attgctcc 543  Q
    | || ||   ||| |||||||||||||| ||| ||||||  ||||||||||| ||  ||||| |||| ||||| || || ||  ||||||  ||||||||    
T  49728622 gtcctaaggtttcggattttggacttgcaaaagtatgtccaagaaaagaaagtatcatatccttattaggtgctagaggtactgcaggatacattgctcc 49728721  T
Q  544 agagttgttctcccaaaattttggtggggtgtcccataaatcagatgtctacagttatggaatgatggttt 614  Q
    |||  |||||||   |||||||||||| || || || ||||| ||||| || |||||||||||||||||||    
T  49728722 agaagtgttctctagaaattttggtggcgtctctcacaaatctgatgtatatagttatggaatgatggttt 49728792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 304 - 723
Target Start/End: Original strand, 49725058 - 49725479
Alignment:
Q  304 gatcgccaattggattgcaaaacattgtataatattgcagttggcgttgctcgtggactagagtattttcgtagaggctgcaacactagaatcttacatt 403  Q
    |||| ||||||||||||| |||| |||||  |||| ||| |||| || ||||| || ||||| ||  | |  | ||||||||| |||||||| || ||||    
T  49725058 gatctccaattggattgccaaacgttgtactatatcgcaattggtgtagctcgagggctagaatacctgcacaaaggctgcaatactagaattttgcatt 49725157  T
Q  404 ttgacataaaacctcataatatattacttgatgaggatttctgcccaaaaaattctgattttggacttgctaaaatatgtctgagaaaagaaagcattgt 503  Q
    ||||||||||||||||||| ||  |  | |||||| |||||  ||| | || ||| |||||||||||||| ||||| ||    ||||||||||| || ||    
T  49725158 ttgacataaaacctcataacattcttttggatgagaatttcaaccccagaatttcggattttggacttgcaaaaatttgcacaagaaaagaaagtatggt 49725257  T
Q  504 atccatatttggtgcaaggggaacgccagg--atattgctccagagttgttctcccaaaattttggtggggtgtcccataaatcagatgtctacagttat 601  Q
    ||| ||||||||||| || |||||| ||||  ||||||| || ||| | || ||    ||||||||||  ||||| ||||| |||||||| |||||||||    
T  49725258 atcaatatttggtgcgagaggaacggcaggctatattgcccccgaggtattttctaggaattttggtgcagtgtcacataagtcagatgtttacagttat 49725357  T
Q  602 ggaatgatggtttaagaaatggttggtcaaagaaagaacatcaaagttgaagtggattgttctagcgatttatattttccacattggatttacaagcgtc 701  Q
    |||||||||||    |||||||||||    ||||| ||||||||   |||||||||  | || || ||  |||||||||| |||||||||||||| ||||    
T  49725358 ggaatgatggtcatggaaatggttgggaggagaaaaaacatcaacactgaagtggaccgctcgagtgaaatatattttcctcattggatttacaaccgtc 49725457  T
Q  702 ttgaattgaatcaagatcttgg 723  Q
    |||| |  ||||| ||||||||    
T  49725458 ttgattcaaatcaggatcttgg 49725479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 398 - 475
Target Start/End: Complemental strand, 11033420 - 11033343
Alignment:
Q  398 tacattttgacataaaacctcataatatattacttgatgaggatttctgcccaaaaaattctgattttggacttgcta 475  Q
    |||| ||||||||||| |||||||| ||  | ||||||||| |||||  |||||||  ||||||||||||||| ||||    
T  11033420 tacactttgacataaagcctcataacatccttcttgatgagaatttcaacccaaaagtttctgattttggactagcta 11033343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 100 - 279
Target Start/End: Original strand, 30986001 - 30986180
Alignment:
Q  100 gcagtgaaggttttaagtgaatcaaaaggtgatggtgaagatttcattaatgaagttgcgagtatcagtagaacttctcatattaatgttgttaggcttt 199  Q
    ||||||||| | |||| || |||||||||  |||||||||| || |||||||| ||||| ||||| | |||||| || ||| ||||||||||||  |||     
T  30986001 gcagtgaagatattaaatgcatcaaaaggaaatggtgaagactttattaatgaggttgctagtattactagaacctcacatgttaatgttgttaaccttc 30986100  T
Q  200 tggggttctgtttggatggttctaaaaaggcactaatatacgaattcatgtctaatggatctcttgagaagttcatatac 279  Q
    | || || ||||| || |||| ||| || || || ||||| ||||| ||||||||||| || ||||| || || ||||||    
T  30986101 ttggattttgttttgaaggttgtaataaagctctcatatatgaatttatgtctaatggttcccttgacaaatttatatac 30986180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 100 - 279
Target Start/End: Original strand, 30992165 - 30992344
Alignment:
Q  100 gcagtgaaggttttaagtgaatcaaaaggtgatggtgaagatttcattaatgaagttgcgagtatcagtagaacttctcatattaatgttgttaggcttt 199  Q
    ||||||||| | |||| || |||||||||  |||||||||| || |||||||| ||||| ||||| | |||||| || ||| ||||||||||||  |||     
T  30992165 gcagtgaagatattaaatgcatcaaaaggaaatggtgaagactttattaatgaggttgctagtattactagaacctcacatgttaatgttgttaaccttc 30992264  T
Q  200 tggggttctgtttggatggttctaaaaaggcactaatatacgaattcatgtctaatggatctcttgagaagttcatatac 279  Q
    | || || ||||| || |||| ||| || || || ||||| ||||| ||||||||||| || ||||| || || ||||||    
T  30992265 ttggattttgttttgaaggttgtaataaagctctcatatatgaatttatgtctaatggttcccttgacaaatttatatac 30992344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 352 - 503
Target Start/End: Original strand, 31224434 - 31224585
Alignment:
Q  352 gctcgtggactagagtattttcgtagaggctgcaacactagaatcttacattttgacataaaacctcataatatattacttgatgaggatttctgcccaa 451  Q
    ||||||||||||||||| || | | |||| || | ||||||||| |||||||||||||||||||| || || ||  |  | |||||  |||| || || |    
T  31224434 gctcgtggactagagtacttgcatggaggatgtaccactagaattttacattttgacataaaaccacacaacatccttttagatgataatttatgtccga 31224533  T
Q  452 aaaattctgattttggacttgctaaaatatgtctgagaaaagaaagcattgt 503  Q
    | | ||| |||||||||||||| ||| ||||||| || ||||||||||||||    
T  31224534 agatttcagattttggacttgcaaaactatgtctcaggaaagaaagcattgt 31224585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 352 - 473
Target Start/End: Complemental strand, 31201522 - 31201401
Alignment:
Q  352 gctcgtggactagagtattttcgtagaggctgcaacactagaatcttacattttgacataaaacctcataatatattacttgatgaggatttctgcccaa 451  Q
    ||||||||||||||||| || | |||||| || | |||| |||| |||||||| ||||||||||| ||||||||  |  | |||||| |||| || ||||    
T  31201522 gctcgtggactagagtacttgcatagaggatgtaccactcgaattttacatttcgacataaaaccacataatattcttttagatgagaatttttgtccaa 31201423  T
Q  452 aaaattctgattttggacttgc 473  Q
    | | ||| ||||||||||||||    
T  31201422 agatttcagattttggacttgc 31201401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 355 - 473
Target Start/End: Complemental strand, 31189712 - 31189594
Alignment:
Q  355 cgtggactagagtattttcgtagaggctgcaacactagaatcttacattttgacataaaacctcataatatattacttgatgaggatttctgcccaaaaa 454  Q
    |||||||||||||| || | |||||| || | ||| ||||| |||||||| ||||||||||| ||||| ||  |  | |||||| |||| || |||||||    
T  31189712 cgtggactagagtacttgcatagaggatgtaccacaagaattttacatttcgacataaaaccacataacattcttttagatgagaatttatgtccaaaaa 31189613  T
Q  455 attctgattttggacttgc 473  Q
     ||| ||||||||||||||    
T  31189612 tttcagattttggacttgc 31189594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 352 - 422
Target Start/End: Complemental strand, 31145657 - 31145587
Alignment:
Q  352 gctcgtggactagagtattttcgtagaggctgcaacactagaatcttacattttgacataaaacctcataa 422  Q
    |||||||| |||||||| || | |||||| || | |||| |||| |||||||||||||||||||| |||||    
T  31145657 gctcgtgggctagagtacttgcatagaggatgtaccactcgaattttacattttgacataaaaccacataa 31145587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 352 - 422
Target Start/End: Complemental strand, 31171970 - 31171900
Alignment:
Q  352 gctcgtggactagagtattttcgtagaggctgcaacactagaatcttacattttgacataaaacctcataa 422  Q
    |||||||| |||||||| || | |||||| || | |||| |||| |||||||||||||||||||| |||||    
T  31171970 gctcgtgggctagagtacttgcatagaggatgtaccactcgaattttacattttgacataaaaccacataa 31171900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 439 - 527
Target Start/End: Original strand, 33305159 - 33305247
Alignment:
Q  439 gatttctgcccaaaaaattctgattttggacttgctaaaatatgtctgagaaaagaaagcattgtatccatatttggtgcaaggggaac 527  Q
    ||||| ||||||||||  || ||||||||||| ||| |||||||||  || || || ||||||||||||||| ||||| |||| |||||    
T  33305159 gatttttgcccaaaaatctcagattttggactagctcaaatatgtcaaaggaaggatagcattgtatccatacttggtacaagaggaac 33305247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0394 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 433 - 484
Target Start/End: Complemental strand, 2166 - 2115
Alignment:
Q  433 gatgaggatttctgcccaaaaaattctgattttggacttgctaaaatatgtc 484  Q
    ||||| ||||| ||||||||||  ||||||||||| ||||||||||||||||    
T  2166 gatgaagatttttgcccaaaaatatctgattttggtcttgctaaaatatgtc 2115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 433 - 484
Target Start/End: Original strand, 15063368 - 15063419
Alignment:
Q  433 gatgaggatttctgcccaaaaaattctgattttggacttgctaaaatatgtc 484  Q
    ||||| ||||| ||||||||||  ||||||||||| ||||||||||||||||    
T  15063368 gatgaagatttttgcccaaaaatatctgattttggtcttgctaaaatatgtc 15063419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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