View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18565_high_10 (Length: 499)
Name: NF18565_high_10
Description: NF18565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18565_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 1 - 484
Target Start/End: Complemental strand, 39936622 - 39936139
Alignment:
| Q |
1 |
acttgaaaatgaatttataatacaaactcaaggtgaggaaaaactgaagaatgtgttcacccaaaaaagaagaatctacctgcacttgtaactgtagcga |
100 |
Q |
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| T |
39936622 |
acttgaaaatgaatttataatacaaactcaaggtgaggaaaaactgaagaatgtgttcacccaaaaaagaagaatctacctgcacttgtaactgcagcga |
39936523 |
T |
|
| Q |
101 |
cttcaagtaatcaattgcttcatccagcatagatgctttgtcagactatgaattaaaagtaggagaaagattagaaaccaaaataaggaagtaaattaaa |
200 |
Q |
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| T |
39936522 |
cttcaagtaatcaattgcttcatccagcatagatgctttgtcagactatgaattaagagtaggagaaagattagaaacaaaaaaaaggaagtaaattaaa |
39936423 |
T |
|
| Q |
201 |
tctaaaaccctgccccttacattatcaagaaataaaacactgggaaatctaaacgtcagtttaccttattagatcgaggtataagttcttgcagagcttt |
300 |
Q |
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| T |
39936422 |
tctaaaaccctgccccttacattatcaagaaataaaacactgggaaatctaaacgtaagtttaccttattagatcgaggtataagttcttgcagagcttt |
39936323 |
T |
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| Q |
301 |
catcttttcattaatccgatcacggcgcctctgcatagaaatgcaatgtgaaaactttaatgttatgaggaaagcagaataaaatatgtaaactcaaaga |
400 |
Q |
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| T |
39936322 |
catcttttcattaatccgatcacggcgcctctgcatagaaatgcaatgtgaaaactttaatgttatgaggaaagcagaataaaatatgtaaactcaaaca |
39936223 |
T |
|
| Q |
401 |
aatgtgcgtcaaaactaccaacccgctctgagagattatggacctcagcagcacgagatctctttgtagatgatccactgatat |
484 |
Q |
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| T |
39936222 |
aatgtgtgtcaaaactaccaacccgctctgagagattatggacctcagcagcacgagatctctttgtagatgatccactgatat |
39936139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 78 - 149
Target Start/End: Original strand, 29731543 - 29731614
Alignment:
| Q |
78 |
acctgcacttgtaactgtagcgacttcaagtaatcaattgcttcatccagcatagatgctttgtcagactat |
149 |
Q |
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| T |
29731543 |
acctgcacttgtaactgcaatgacttcaagtattcgattgcttcatccaacattgaagctttgtcagactat |
29731614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Original strand, 29731712 - 29731749
Alignment:
| Q |
278 |
ggtataagttcttgcagagctttcatcttttcattaat |
315 |
Q |
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| T |
29731712 |
ggtataagttcttgcaaagctttcatcttttcgttaat |
29731749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 466
Target Start/End: Original strand, 29731844 - 29731889
Alignment:
| Q |
421 |
acccgctctgagagattatggacctcagcagcacgagatctctttg |
466 |
Q |
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| T |
29731844 |
accctctctgagagattatgaacctctgcagcacgggatctctttg |
29731889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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