View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18565_high_11 (Length: 493)
Name: NF18565_high_11
Description: NF18565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18565_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 9 - 475
Target Start/End: Complemental strand, 5304298 - 5303832
Alignment:
| Q |
9 |
gattattctattatggtctccgagacacatctgctacttatgctgtcaactttctcaacttggttcccatttgcaccttcttgacttctatcatatgcag |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5304298 |
gattattctattatggtctccgagacacatctgctacttatgctgtcaactttctcaacttggttcccatttgcaccttcttgacttctatcatatgcag |
5304199 |
T |
|
| Q |
109 |
gtatccaaattaattaaagacacattaaatttagctacataaacaaattaaactaccatatactagtatgtataaatttgtgaatgactactactgcaga |
208 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5304198 |
gtatccaaattagttaaagacacattaaatttagctacataaacaaattaaactaccatatactagtatgtataaatttgtgaatgactactactgcaga |
5304099 |
T |
|
| Q |
209 |
atggagaatttgagtattagaacatgggttggtagagctaagggtattggggcaattttgtgtgttggtggagcattagctacaagtctttacaaaggga |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5304098 |
atggagaatttgagtattagaacatgggttggtagagctaagggtattggggcaattttgtgtgttggtggagcattagctacaagtctttacaaaggga |
5303999 |
T |
|
| Q |
309 |
aggaattttatattggtcctcatcatcatagttcccattctgcagtggtcatttctgttgtagcacataaaactcatatgcttcgtggaactttcttttt |
408 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5303998 |
aggaattttatattggtcctcatcatcatagttcccattctgcaggggttatttctgttgtagcacataaaactcatatgcttcgtggaactttcttttt |
5303899 |
T |
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| Q |
409 |
ggttggatcatgttgcttttacacagcttggtttattctgcaagtatgtatatatgctccccttttt |
475 |
Q |
| |
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| T |
5303898 |
ggttggatcatgttgcttttacacagcttggtttattctgcaagtatgtatatatgctccccttttt |
5303832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 115; Significance: 3e-58; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 11 - 457
Target Start/End: Complemental strand, 29224593 - 29224154
Alignment:
| Q |
11 |
ttattctattatggtctccgagacacatctgctacttatgctgtcaactttctcaacttggttcccatttgcaccttcttgacttctatcatatgcaggt |
110 |
Q |
| |
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||||||||||| ||||| ||||||||| ||||||||||| | ||||||||||||||||||||||| || | || ||||| ||||||||||||||||||| |
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| T |
29224593 |
ttattctattacggtcttcgagacacaactgctacttattccgtcaactttctcaacttggttcctatattgacattcttaacttctatcatatgcaggt |
29224494 |
T |
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| Q |
111 |
atccaaattaattaaagacacattaaatttagctacataaacaaattaaactaccatatactagtatgtataaatttgtgaatgactactactgcagaat |
210 |
Q |
| |
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|| || ||||| || |||| ||||||||| ||||||| || ||| ||| ||||||||| || |||| | | | |||||||| |
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| T |
29224493 |
atataatctaatttaa-----------tttaactacataaataaattaatcttccaaata--------tataaatttttggatgagtgcaattgcagaat |
29224413 |
T |
|
| Q |
211 |
ggagaatttgagtattagaacatgggttggtagagctaagggtattggggcaattttgtgtgttggtggagcattagctacaagtctttacaaagggaag |
310 |
Q |
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| T |
29224412 |
ggagaatttgaagattggaacatggggtggtagagccaagtgtataggagctattatgtgtgttggtggagcattagcaacgagtctttacaaagggaag |
29224313 |
T |
|
| Q |
311 |
gaattttatattgg------------tcctcatcatcatagttcccattctgcagtggtcatttctgttgtagcacataaaactcatatgcttcgtggaa |
398 |
Q |
| |
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|||||||||||||| || ||||||||||||| ||||||||| | | | | | |||||| |||||| |||||||| ||| ||||||| | |
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| T |
29224312 |
gaattttatattggtcatcatcatcatcatcatcatcatagtcaccattctgctgagattagtgctgttgcagcacacaaaactcacatgtttcgtggca |
29224213 |
T |
|
| Q |
399 |
ctttctttttggttggatcatgttgcttttacacagcttggtttattctgcaagtatgt |
457 |
Q |
| |
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||||||||||||||||| |||| || | |||||| |||||||||||||| ||||||||| |
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| T |
29224212 |
ctttctttttggttggagcatgctgttcttacactgcttggtttattcttcaagtatgt |
29224154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 11 - 457
Target Start/End: Original strand, 29147062 - 29147527
Alignment:
| Q |
11 |
ttattctattatggtctccgagacacatctgctacttatgctgtcaactttctcaacttggttcccatttgcaccttcttgacttctatcatatgcaggt |
110 |
Q |
| |
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||||||||||||||||| ||||||||| ||||| ||||| | ||||| |||||||||||||| || |||||||| ||||| || ||||| |||| ||||| |
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| T |
29147062 |
ttattctattatggtcttcgagacacaactgctgcttattcagtcaattttctcaacttggtacctatttgcacattcttaacctctataatattcaggt |
29147161 |
T |
|
| Q |
111 |
atccaaattaattaaagacacattaaatttagctacat---aaacaaattaaactaccatatact-agt---------atgtataaatttgtgaatgact |
197 |
Q |
| |
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||| |||||| || |||| | ||| ||||||| ||||| ||| ||| ||| || |||||| ||| || ||||| || ||||| | |
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| T |
29147162 |
atctaaattactttaagataaatttaatttagttacataataaataaactaatctgacatatatagagtcatagatagatacataaaattctgaataaaa |
29147261 |
T |
|
| Q |
198 |
actactgcagaatggagaatttgagtattagaacatgggttggtagagctaagggtattggggcaattttgtgtgttggtggagcattagctacaagtct |
297 |
Q |
| |
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| |||| ||||||||||||||||| ||| ||||||||| ||||||||| ||| |||| || || ||| |||||||||||||||||||||| || ||||| |
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| T |
29147262 |
attactacagaatggagaatttgaagattggaacatggggtggtagagccaagtgtataggagctattatgtgtgttggtggagcattagcaacgagtct |
29147361 |
T |
|
| Q |
298 |
ttacaaagggaaggaattttatattgg------tcctcatcatcatagttcccattctgcagtggtcatttctgttgtagcacataaaactcatatgctt |
391 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||||||||| ||||||||| | | | | | |||||| |||||| ||||||| ||| || |
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| T |
29147362 |
ttacaaagggaaggaattttatattggtcatcatcatcatcatcatagtcaccattctgctgagattagtgctgttgcagcacacaaaactcgcatgttt |
29147461 |
T |
|
| Q |
392 |
cgtggaactttctttttggttggatcatgttgcttttacacagcttggtttattctgcaagtatgt |
457 |
Q |
| |
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||||| |||||||||||||||||| |||| || | |||||| |||||||||||||| ||||||||| |
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| T |
29147462 |
cgtggcactttctttttggttggagcatgctgttcttacactgcttggtttattcttcaagtatgt |
29147527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 197 - 323
Target Start/End: Complemental strand, 38852015 - 38851889
Alignment:
| Q |
197 |
tactactgcagaatggagaatttgagtattagaacatgggttggtagagctaagggtattggggcaattttgtgtgttggtggagcattagctacaagtc |
296 |
Q |
| |
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||||| ||||||||||||||||||| ||| |||||| ||||||||||||| || | ||||||||||||||||||| |||| |||||||| |||| | |
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| T |
38852015 |
tactattgcagaatggagaatttgaacattcacacatggaatggtagagctaagtgtgtcggggcaattttgtgtgttgctggaacattagctgcaagac |
38851916 |
T |
|
| Q |
297 |
tttacaaagggaaggaattttatattg |
323 |
Q |
| |
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| |||||||| ||||| ||||| |||| |
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| T |
38851915 |
tatacaaaggaaaggagttttacattg |
38851889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 38852170 - 38852097
Alignment:
| Q |
20 |
tatggtctccgagacacatctgctacttatgctgtcaactttctcaacttggttcccatttgcaccttcttgac |
93 |
Q |
| |
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|||||| | |||||||||||||| || |||||| |||| ||||||||||| |||| || ||||| |||||||| |
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| T |
38852170 |
tatggtattcgagacacatctgccacatatgctctcaattttctcaacttaattcctatctgcacattcttgac |
38852097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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