View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18565_high_14 (Length: 467)
Name: NF18565_high_14
Description: NF18565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18565_high_14 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 18 - 467
Target Start/End: Original strand, 50751509 - 50751958
Alignment:
| Q |
18 |
ataaggacagttggaatcatagagagggtaggtttgatcaaatatccattttccaactgagaaatcacatttcttccatgaatctctttgggtttgcacc |
117 |
Q |
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| T |
50751509 |
ataaggacagttggaatcatagagagggtaggtttgatcaaatatccattttccaactgagaaatcacatttcttccatgaatctctttgggtttgcacc |
50751608 |
T |
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| Q |
118 |
atgttgacatcttcagtttcttccaatgcaagccaactcgacacatcctctggattgatcagtgatgatgcgcagttgaataagcctaagaaggtggtga |
217 |
Q |
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| T |
50751609 |
atgttgacatcttcagtttcttccaatgcaagccaactcgacacatcctctggattgatcagtgatgatgcgcagttgaataagcctaagaaggtggtga |
50751708 |
T |
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| Q |
218 |
agaagaataaaaatgataataaatgaaggtttggttttgccattttggaagctcaaggtgagagagagcatagagtcatagttgtgaaggagtttttgta |
317 |
Q |
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| T |
50751709 |
agaagaataaaaatgataataaatgaaggtttggttttgccattttggaagctcaaggtgagagagagcatagagtcatagttgtgaaggagtttttgta |
50751808 |
T |
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| Q |
318 |
acttagaaaggaccttgttgatgaaaagtgtttgatcaaggcatgacttacggtgttgtggaccatgcaaatttgttacttttactaattgctattgatt |
417 |
Q |
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|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50751809 |
actttgaaaggacattgttgatgaaaagtgtttgatcaaggcatgacttacggtgttgtggaccatgcaaatttgttacttttactaattgctattgatt |
50751908 |
T |
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| Q |
418 |
gattgatctttgtaccaatcacatttttcttcttcttttttacaaaaatt |
467 |
Q |
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| T |
50751909 |
gattgatctttgtaccaatcacatttttcttcttcttttttacaaaaatt |
50751958 |
T |
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