View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18565_high_16 (Length: 437)
Name: NF18565_high_16
Description: NF18565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18565_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 47549043 - 47549283
Alignment:
| Q |
10 |
aagaatattgatgacccagaattcaatggaacagttattataaaagaaattaagattcttaccaactcaggaatttgagcaagttccatcactttcatag |
109 |
Q |
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| T |
47549043 |
aagaatattgatgacccagaattcaatggaacagttattataaaagaaattaagattcttaccaactcaggaatttgagcaagttccatcactttcatag |
47549142 |
T |
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| Q |
110 |
aggnnnnnnngggatatagaagaggaaaaaagtggtgcagtgtttattttgaagtttctgcgtcaaaagttgcgtattgaatgagtcaagagtacctgaa |
209 |
Q |
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| T |
47549143 |
aggaaaaatagggatatagaagaggaaaaaagtggggtagtgtttattttgaagtttctgcgtcaaaagttgcgtattgaatgagtcaagagtacctgaa |
47549242 |
T |
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| Q |
210 |
tgaaaattgaaaattcatatgaagaaactcaactttacatg |
250 |
Q |
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| T |
47549243 |
tgaaaattgaaaattcatatgaagaaactcaactttacatg |
47549283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 295 - 422
Target Start/End: Original strand, 47549328 - 47549455
Alignment:
| Q |
295 |
gtacctgtgaaccataacacagaaatttggtctttaacgagtgttttttggttttcacaattcttgaaaatctgcaaagtttgtaaaagacagaggaaag |
394 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47549328 |
gtacatgtgaaccataacacagaaatttggtctttaacgagtgttttttggttttcacaattcttgaaaatctgcaaagtttgtaaaagacagaggaaag |
47549427 |
T |
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| Q |
395 |
aacgggtaagagaagttggtggtagttt |
422 |
Q |
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| T |
47549428 |
aacgggtaagagaagttggtggtagttt |
47549455 |
T |
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