View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18565_high_17 (Length: 425)
Name: NF18565_high_17
Description: NF18565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18565_high_17 |
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Alignment Details
Target: chr6 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 16 - 412
Target Start/End: Original strand, 26234897 - 26235305
Alignment:
| Q |
16 |
atcatatgttaatgaattttaacttttaatggttatatcttccacaaaataaaatcccaaatctgaaatttcaaggatctaaaacccaacaataccatca |
115 |
Q |
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| T |
26234897 |
atcatatgttaatgaattttaatttttaatggttatatcttccacaaaataaaatcccaaatgtgaaatttcaaggatctaaaacccaacaataccatca |
26234996 |
T |
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| Q |
116 |
tccatgttaacttgaatttaaatcaaagatatgttgggatatcaaccatg----aatgttgaataatagttttgcaatagccaattaacaaatgaaaacg |
211 |
Q |
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| T |
26234997 |
tccatgttaacttgaatttaaatcaaagatatgttgggatatcaaccatgaattaatgttgaataatagttttgcaatagccaattaacaaatgaaaacg |
26235096 |
T |
|
| Q |
212 |
cagacaatattttaatagtgggatctaagatgatttgttttttaatgttcttgt--------ccaagattagttgattagaattttggactttatagaga |
303 |
Q |
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| T |
26235097 |
cagacaatattttaatagtgggatctaagatgatttgttttttaatgttcttgtcacgccaaccaagattagttgattagaattttggactttatagaga |
26235196 |
T |
|
| Q |
304 |
gtggtaggtgagtgtctggttgagaagtgcaacaacgggaaacaaggactaggtggaggctatgtctaatggtctacaaggattaattcaaggtttctta |
403 |
Q |
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| T |
26235197 |
gtggtaggtgagtgtctggttgagaagtgcaacaacgggaaacaaggactaggtggaggctatgtctaattgtctacaaggattaattcaaggtttctta |
26235296 |
T |
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| Q |
404 |
tattatact |
412 |
Q |
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| T |
26235297 |
tattatact |
26235305 |
T |
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