View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18565_high_19 (Length: 409)
Name: NF18565_high_19
Description: NF18565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18565_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 129; Significance: 1e-66; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 263 - 399
Target Start/End: Original strand, 4015586 - 4015722
Alignment:
| Q |
263 |
gaaggaatggttttggaatacacgatgtatagggtgtctaacgatgctgaattcttccttatgttcaacgtgatatcccggaatacagattgtgttcttc |
362 |
Q |
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| T |
4015586 |
gaaggaatggttttggaatacacgatgtatagggtgtctaacgatgctgaattcttccttatgttcaacgtgatatcccggaatacagattgtgttcttc |
4015685 |
T |
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| Q |
363 |
gtgattattgttaagagcgaagggtttcgtgtctgtg |
399 |
Q |
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| T |
4015686 |
gtgattatttttaagagcgaagagtttcgtgtctgtg |
4015722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 18 - 135
Target Start/End: Original strand, 4015317 - 4015434
Alignment:
| Q |
18 |
ttgagaactttcacatctgatgttgtctctcgtttacagaacgccaccactttataagctccagttgaattgtcacatccaaaggcaaagccgaaatctc |
117 |
Q |
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| T |
4015317 |
ttgagaactttcacatctgatgttgtctctcgtttacagaacgccaccactttataagctccagttgaattatcacatccaaaggcaaagtcgaaatctc |
4015416 |
T |
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| Q |
118 |
tactggggtcacaaatat |
135 |
Q |
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| T |
4015417 |
tactagggtcacaaatat |
4015434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 171 - 257
Target Start/End: Original strand, 4015434 - 4015520
Alignment:
| Q |
171 |
ttccaaacacagagccagtactcaaaaccataaacagttttagaaacaacttccaaaagaagcaatccattacaggaatcaactatc |
257 |
Q |
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| T |
4015434 |
ttccaaacacagagccagtactcaaaaccataaacagtttcagaaacaacttccaaaagaagcaatccattacaggaatcaactatc |
4015520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 4017168 - 4017225
Alignment:
| Q |
60 |
gccaccactttataagctccagttgaattgtcacatccaaaggcaaagccgaaatctc |
117 |
Q |
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| T |
4017168 |
gccaccactttataagttgcagttgaattatcacatccaaatgcaaagccgaaatctc |
4017225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 4570651 - 4570561
Alignment:
| Q |
17 |
attgagaactttcacatctgatgttgtctctcgtttacagaacgccaccactttataagctccagttgaattgtcacatccaaaggcaaag |
107 |
Q |
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| T |
4570651 |
attgagaactctgacctctgatgctgtctcttgattacagtacgccaccactttataagtttcgtttgaattatcacatccaaagccaaag |
4570561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 107
Target Start/End: Original strand, 21855820 - 21855869
Alignment:
| Q |
58 |
acgccaccactttataagctccagttgaattgtcacatccaaaggcaaag |
107 |
Q |
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| T |
21855820 |
acgccaccactttataagttccggttgaattatcacatccaaaggcaaag |
21855869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 107
Target Start/End: Original strand, 24331336 - 24331385
Alignment:
| Q |
58 |
acgccaccactttataagctccagttgaattgtcacatccaaaggcaaag |
107 |
Q |
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| T |
24331336 |
acgccaccactttataagttccggttgaattatcacatccaaaggcaaag |
24331385 |
T |
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