View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18565_high_20 (Length: 405)
Name: NF18565_high_20
Description: NF18565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18565_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 16 - 382
Target Start/End: Complemental strand, 34738142 - 34737776
Alignment:
| Q |
16 |
atagttaagcataagtcaaaatttagtgtaggactaatttatccatcatatacaaatatcaggaattagattggatctcaaacaatttatgagagataaa |
115 |
Q |
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| T |
34738142 |
atagttaagcataagtcaaaatttagtgtaggactaatttatccatcatatacaaatatc----------ttggatctcaaacaatttatgagagataaa |
34738053 |
T |
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| Q |
116 |
attgatttttcttcctttctttcttttgtgtgataggatatttgtttgctctttagtagcgtacaggtagcacggtcttcgggaagcaaactgttgccga |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34738052 |
attgatttttcttcctttctttcttttgtgtgataggagatttggttgctctttattagcgtacaggtagcacggtcttcgggaagcaaactgttgccga |
34737953 |
T |
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| Q |
216 |
aacttgggactcaaggatggat-ggatataccttaaagatgtttgaaccctttaagccgtgtatccagcaaatatcataacaacataatctta----aaa |
310 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||| |
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| T |
34737952 |
aacttgggactcaaggatggatgggatataccttaaagatgtttgaaccctttaaaccgtgtatccagcaaatatcataacaacataaccttaacataaa |
34737853 |
T |
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| Q |
311 |
tatt-----attatatttaatcctagactaaagatgaataaaatagatatgcaggtcgaagttcaaacctcaaacac |
382 |
Q |
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|||| ||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||| |||||||| |
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| T |
34737852 |
tattttaagattatatttaatcctagactaaatacgaataaaatagatatgcaggtcaaagttcaaacttcaaacac |
34737776 |
T |
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