View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18565_high_25 (Length: 384)
Name: NF18565_high_25
Description: NF18565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18565_high_25 |
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Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 16 - 370
Target Start/End: Complemental strand, 6189977 - 6189622
Alignment:
| Q |
16 |
attacttcaagtggaaggagtttaggatggnnnnnnnnn-gttttaagaattctaataccctgtcttttatatgtgacaaatttatctattttgttttta |
114 |
Q |
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| T |
6189977 |
attacttcaagtggaaggagtttaggatggaaaaaaaaaagttttaagaattctaataccctgtcttttatatgtgacaaatttatctattttgttttta |
6189878 |
T |
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| Q |
115 |
cctttgtatctaaatcttttagcatggaaaagttacattagattagacaccaactaatttgattaaagagaaaaagacccattaagaaacaaaattctgc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6189877 |
cctttgtatctaaatcttttagcatggaaaagttacattagattagacaccaactaatttgattaaagagaaaaagacccattaagaaacaaaattctgc |
6189778 |
T |
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| Q |
215 |
taatctaatgcaaattccaattttgagatcttattttaaagatatgtgtgccacacaatctaatgtcaccatcttggaatttggcataaccatatttatt |
314 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6189777 |
taatctaatgcaaattccaattttgagattttattttaaagatatgtgtgccacacaatctaatgtcaccatcttggaatttggcataaccatatttatt |
6189678 |
T |
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| Q |
315 |
gatttaatcttaattaaatttaagggtgtttgccaagcagcagtaaatgaacaaaa |
370 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6189677 |
gatttaatcttaattaaatttaagggtgtttgccaagcagcagtaaatgaacaaaa |
6189622 |
T |
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