View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18565_high_28 (Length: 375)
Name: NF18565_high_28
Description: NF18565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18565_high_28 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 80 - 368
Target Start/End: Original strand, 50752781 - 50753068
Alignment:
| Q |
80 |
tttacaccactactaataagtttagagatttttattacttatatagaaaacaaattgatcaatctcttttttaaaacccatttgttnnnnnnnntggaaa |
179 |
Q |
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| T |
50752781 |
tttacaccactactaataagtttagagatttttattacttatatagaaaacaaattgatcaatctcttttttaaaacccatttgt-caaaaaaatggaaa |
50752879 |
T |
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| Q |
180 |
atctctccgctcaaaccttgattccacgtgtatggtcttggttcaatacgcgcttgctccatctataaagcacgcacttccttcatctatatattctcta |
279 |
Q |
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|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
50752880 |
atctctccactcaaaccctgattccacgtgtatggtcttggttcaatacgcgcttgctccatctataaagcacgcacttcctccatctatatattctcta |
50752979 |
T |
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| Q |
280 |
tccagtacccttattctcacactctcatacattcacgttcttcgcatttattagtctctctcatcacatttcactctctatttcatctc |
368 |
Q |
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||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
50752980 |
tccagtacccttattctcacactctcatatattcaccttcttcgcatttattagtctctctcatcacatttcactctctatttcctctc |
50753068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 50752154 - 50752235
Alignment:
| Q |
1 |
tagtttaaaacatacaaatattaaaaatggttgtgatggatacggatgtacacgaagtcgaactaaaaagtgagtggccttt |
82 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||| |||||||||||||||| |
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| T |
50752154 |
tagtttaaaacatacaaatattaaaaatagttgtgatggatacggatgaacatgaagtcgaactagaaagtgagtggccttt |
50752235 |
T |
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