View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18565_high_32 (Length: 361)
Name: NF18565_high_32
Description: NF18565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18565_high_32 |
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Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 21197181 - 21196832
Alignment:
| Q |
1 |
accttcttactcctcaatgggatttggcaataccgaataaggccaagatatccttctcatatggatattaaattgtctcatgctgatacagctgctactg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
21197181 |
accttcttactcctcaatgggatttggcaataccgaataaggccaagatatccttctcatatggatattaaattgtctcatgctgatacagctactactg |
21197082 |
T |
|
| Q |
101 |
aagaacttgaagaagagtttgatccttttccaactaaatttagcggtggtaatctgcagaaaaggtatgatagattgagaggcatttcagggagagtgct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
21197081 |
aagaacttgaagaagagtttgatccttttccaactaaatttagcggtggtaatctgcataaaaggtatgatagattgagaggcatttcagggagagtgct |
21196982 |
T |
|
| Q |
201 |
tgctgtgatgggtgatttggcaactcaaggagagagggtgcagtctcttatcagctggagggatccaagagcaacggctttgttcctaattttctgtttg |
300 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
21196981 |
tgttgtgatgggtgatttggcaactcaaggagagagggtgcattctcttatcagctggagggatccaagagcaatggctttgttcctaattttctgtttg |
21196882 |
T |
|
| Q |
301 |
attgctgccattttgacttatttcattccttttcgatatatactcttcat |
350 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
21196881 |
attgctgccattttgacttatttcattctttttcgatatatactcttcat |
21196832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 27253023 - 27252676
Alignment:
| Q |
1 |
accttcttactcctcaatgggatttggcaataccgaataaggccaagatatccttctcatatggatattaaattgtctcatgctgatacagctgctactg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
27253023 |
accttcttactcctcaatgggatttggcaataccgaataaggccaagatatccttctcat--ggatattaaattgtctcatgctgatacagctactactg |
27252926 |
T |
|
| Q |
101 |
aagaacttgaagaagagtttgatccttttccaactaaatttagcggtggtaatctgcagaaaaggtatgatagattgagaggcatttcagggagagtgct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27252925 |
aagaacttgaagaagagtttgatccttttccaactaaatttagcggtggtaatctgcagaaaaggtatgatagattgagaggcatttcagggagagtgct |
27252826 |
T |
|
| Q |
201 |
tgctgtgatgggtgatttggcaactcaaggagagagggtgcagtctcttatcagctggagggatccaagagcaacggctttgttcctaattttctgtttg |
300 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
27252825 |
tgttgtgatgggtgatttggcaactcaaggagagagggtgcaatctcttatcagctggagggatccaagagcaaaggctttgttcctaattttctgtttg |
27252726 |
T |
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| Q |
301 |
attgctgccattttgacttatttcattccttttcgatatatactcttcat |
350 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27252725 |
attgctgccattttgacttatttcattccttttcgatatatactcttcat |
27252676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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