View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18565_high_33 (Length: 358)
Name: NF18565_high_33
Description: NF18565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18565_high_33 |
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Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 3863603 - 3863251
Alignment:
| Q |
1 |
taaatcataaactaatattgccaaataagaagctattgcagattccattatttctttcaatcgcaatttctataataagcatgcaacaataccgtgttgg |
100 |
Q |
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| T |
3863603 |
taaatcataaactaatattgccaaataagaagctattgcagattccattatttctttccatcgcaatttctaaaataagcatgcaacactaccgtgttgg |
3863504 |
T |
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| Q |
101 |
tgctggtttacatgtatttgtgataacaatcatgagctggtatgattcggagttcggactgatgggacatatccggaagtacaaagcaagtgatgtgtat |
200 |
Q |
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| T |
3863503 |
tgctggtttacatgtatttgtgataacaatcatgagctggtatgattcggagttcggacagatgggacatatccggaagcacaaagcaagtgatgtgtat |
3863404 |
T |
|
| Q |
201 |
agagttgaaagttgatttgataattattggaacatgataataaatgcttgctgttttgaaggtgggacctttttgtc------cttaaagtgtaggataa |
294 |
Q |
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| T |
3863403 |
agagttgaaagttgatttgataattattggaacatgataataaatgcttgctgttttgaaggtgggacctttttgtctgacctcttaaagtgtaggataa |
3863304 |
T |
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| Q |
295 |
tactatatatagcacacttgtgtataacaattagtttagcagtatatgatgat |
347 |
Q |
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||||||||||| |||||||||||||||| |||||||||||||||||| ||||| |
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| T |
3863303 |
tactatatataccacacttgtgtataaccattagtttagcagtatattatgat |
3863251 |
T |
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