View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18565_high_34 (Length: 332)
Name: NF18565_high_34
Description: NF18565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18565_high_34 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 27697516 - 27697225
Alignment:
| Q |
1 |
tgatggaagtagatatattgagagctttccattttggagatgtttacatgacggttagtataatcttgcataacaaagtgaagaataattaagacaatta |
100 |
Q |
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| T |
27697516 |
tgatggaagttgatatattgagagctttccattttggagatgttcacatgacggttagtatgatcttgcataacaaagtgaagattaattaagacaatta |
27697417 |
T |
|
| Q |
101 |
tttttgcaaagaactctgatagagctctttgccttgatgattttgatgaagccatgttctttcaaaagaataggaaatagcttaaaatatgatgggaaat |
200 |
Q |
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| T |
27697416 |
tttttgcaaagaactctgatagaactctttgccttgatgattttgatgaagccatgttctttcaaaagaataggaaatagcttaaaatatgat------- |
27697324 |
T |
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| Q |
201 |
agcttaaaatatgatgttatcaatattgttatcattcaatttttcaaccatgattggtaggcatttataatttggcaatgctaatcttcaagaattgagc |
300 |
Q |
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|||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
27697323 |
---------------gttaacaatattgttatcattcaatatttcaaccatgattggttggcatttataatttggcaatgctaatcttcaagaattgagc |
27697239 |
T |
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