View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18565_high_39 (Length: 305)
Name: NF18565_high_39
Description: NF18565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18565_high_39 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 8e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 19950999 - 19950715
Alignment:
| Q |
1 |
taatttgtagttgaaggaaatgtgattgtgtggtgtcaaatagttggtaatcaattgcatgtccctat--gaccatac-aaaaaacaatgatttgctttt |
97 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
19950999 |
taatttgtagttgaaggaaatgtgtatgtgtggtgtcaaatagttggtaatcaattgcatgtccctatatgaccataccaaaaaacaatgatttgctttt |
19950900 |
T |
|
| Q |
98 |
caaaatatatatcattttaattaggaaaaacaatgattttccttcaa-nnnnnnnnnaggaaaacaatgatttgaagcataaaccgaaatgacgaacatc |
196 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
19950899 |
caaaatatatatcattttaattaagaaaaacaatgattttccttcaattttttttttaggaaaacaatgatttgaatcataaaccgaaatgacgaacatc |
19950800 |
T |
|
| Q |
197 |
aagatcaaagttaataattcatcgatttgggaacgaaatcaaaccattcaaacaatcaaactaaacaataggaaaataacacattttttaatactatata |
296 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19950799 |
aagatcaaagttaataattcatcgatttgggaacg-----------------caatcaaactaaacaataggaaaataacacattttttaatactatata |
19950717 |
T |
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