View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18565_high_45 (Length: 248)
Name: NF18565_high_45
Description: NF18565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18565_high_45 |
 | |
|
| [»] chr5 (5 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 12 - 248
Target Start/End: Original strand, 12039115 - 12039351
Alignment:
| Q |
12 |
ttctcataacaacatagagaagcttcctagttgcatcacaactcttatccacttgcaaacgttgaaactttctcaatgtcattttctcaaggaattgcca |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12039115 |
ttctcataacaacatagagaagcttcctagttgcatcacaactcttatccacttgcaaacgttgaaactttctcaatgtcattttctcaaggaattgcca |
12039214 |
T |
|
| Q |
112 |
aaagacatggatgatttgagttgcctcaaccatcttgacttagagggatgcttggatctaactcaaatgccaagtgggataaataagctcacttctttac |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12039215 |
aaagacatggatgatttgagttgcctcaaccatcttgacttagagggatgcttggatctaactcaaatgccaagtgggataaataagctcacttctttac |
12039314 |
T |
|
| Q |
212 |
aaacattgacactctttgtagctagcaagaaatacgt |
248 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |
|
|
| T |
12039315 |
aaacattgtcactctttgtagctagcaagaaatacgt |
12039351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 11860354 - 11860581
Alignment:
| Q |
16 |
cataacaacatagagaagcttcctagttgcatcacaactcttatccacttgcaaacgttgaaactttctcaatgtcattttctcaaggaattgccaaaag |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||| |||||||||||| | ||||||||||||||||||| |
|
|
| T |
11860354 |
cataacaacatagagaagcttcctagttgcataacaaatcttatccacttgcaaacattgaaactgtctcaatgtcatgtcctcaaggaattgccaaaag |
11860453 |
T |
|
| Q |
116 |
acatggatgatttgagttgcctcaaccatcttgacttagagggatgcttggatctaactcaaatgccaagtgggataaataagctcacttctttacaaac |
215 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
11860454 |
acatggacgatttgagttgcctcaatcatcttgacttagagggatgcttggatctaactcaaatgccaagtgggataaataagcttacttctttgcaaac |
11860553 |
T |
|
| Q |
216 |
attgacactctttgtagctagcaagaaa |
243 |
Q |
| |
|
|||| |||| || ||||| ||||||||| |
|
|
| T |
11860554 |
attgtcacttttcgtagccagcaagaaa |
11860581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 11828219 - 11828446
Alignment:
| Q |
16 |
cataacaacatagagaagcttcctagttgcatcacaactcttatccacttgcaaacgttgaaactttctcaatgtcattttctcaaggaattgccaaaag |
115 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||| ||||||| | ||||| ||||||||||||| |
|
|
| T |
11828219 |
cataacaacatggagaagcttcctagttgcataacaaatcttatccacttgcaaacgttgaaactgtctcgatgtcatgtcctcaaagaattgccaaaag |
11828318 |
T |
|
| Q |
116 |
acatggatgatttgagttgcctcaaccatcttgacttagagggatgcttggatctaactcaaatgccaagtgggataaataagctcacttctttacaaac |
215 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||| |
|
|
| T |
11828319 |
acatggatgatttgagttgccttaaccatcttgacttagatggatgcttggatctaactcaaatgccaagtggaataagtaagctcacttctttgcaaac |
11828418 |
T |
|
| Q |
216 |
attgacactctttgtagctagcaagaaa |
243 |
Q |
| |
|
|||| |||| || ||||| ||||||||| |
|
|
| T |
11828419 |
attgtcacttttcgtagccagcaagaaa |
11828446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 12 - 243
Target Start/End: Complemental strand, 11902207 - 11901976
Alignment:
| Q |
12 |
ttctcataacaacatagagaagcttcctagttgcatcacaactcttatccacttgcaaacgttgaaactttctcaatgtcattttctcaaggaattgcca |
111 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||| |||||| | ||||||||||||||||| |||||| | || |||||||| | ||||||||||||||| |
|
|
| T |
11902207 |
ttctcataacaacatagaaaagctacctagttccatcactaagcttatccacttgcaaacattgaaattatcacaatgtcacatcctcaaggaattgcca |
11902108 |
T |
|
| Q |
112 |
aaagacatggatgatttgagttgcctcaaccatcttgacttagagggatgcttggatctaactcaaatgccaagtgggataaataagctcacttctttac |
211 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||||| | ||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
11902107 |
aaagacttggatggcctgagttgcctcaaccatcttgacattgagggatgcctggatctaactcacatgccaagtggtataaataagctcacttctttac |
11902008 |
T |
|
| Q |
212 |
aaacattgacactctttgtagctagcaagaaa |
243 |
Q |
| |
|
|||||||| |||||||||| || ||||||||| |
|
|
| T |
11902007 |
aaacattgtcactctttgtggccagcaagaaa |
11901976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 19 - 243
Target Start/End: Original strand, 11732002 - 11732226
Alignment:
| Q |
19 |
aacaacatagagaagcttcctagttgcatcacaactcttatccacttgcaaacgttgaaactttctcaatgtcattttctcaaggaattgccaaaagaca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||| || | |||||| | ||||||||||||||||||||| |
|
|
| T |
11732002 |
aacaacatagagaagcttcctagttgcatcacaaagcttatccatttgcaaaccttgaaactctcctactgtcatgtcctcaaggaattgccaaaagact |
11732101 |
T |
|
| Q |
119 |
tggatgatttgagttgcctcaaccatcttgacttagagggatgcttggatctaactcaaatgccaagtgggataaataagctcacttctttacaaacatt |
218 |
Q |
| |
|
|| | ||| ||| | |||||| ||||||| || | ||||| ||||||||||||||||| ||||||| |||||| |||| |||||||| ||||||||||| |
|
|
| T |
11732102 |
tgaaggatctgactcgcctcagccatcttaacattgagggttgcttggatctaactcacatgccaaccgggatagataaactcacttccttacaaacatt |
11732201 |
T |
|
| Q |
219 |
gacactctttgtagctagcaagaaa |
243 |
Q |
| |
|
| |||| || || || ||||||||| |
|
|
| T |
11732202 |
gtcacttttcgtggccagcaagaaa |
11732226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University