View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18565_high_48 (Length: 231)
Name: NF18565_high_48
Description: NF18565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18565_high_48 |
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Alignment Details
Target: chr4 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 17 - 138
Target Start/End: Original strand, 39330347 - 39330468
Alignment:
| Q |
17 |
agaagcagaaggtattcagataaattcacataacgtgaaccacaattttatcattcatatcatatcaatggtaacaaatttctaagttcattgttggtgt |
116 |
Q |
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| T |
39330347 |
agaagcagaaggtattcagataaattcacataacgtgaaccacaattttatcattcctatcatatcaatggtaacaaatttctaagttcattgttggtgt |
39330446 |
T |
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| Q |
117 |
gataaatactatacacacctat |
138 |
Q |
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| T |
39330447 |
gataaatactatacacacctat |
39330468 |
T |
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Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 141 - 215
Target Start/End: Original strand, 39330504 - 39330578
Alignment:
| Q |
141 |
atgttaattctgttaaaatttaattcagctgaaaagaaatgtacgtagttggtggcattagtaatacacagtatt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39330504 |
atgttaattctgttaaaatttaattcagctgaaaagaaatgtacgtagttggtggcattagtaatacacagtatt |
39330578 |
T |
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