View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18565_high_5 (Length: 668)
Name: NF18565_high_5
Description: NF18565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18565_high_5 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 551; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 1 - 651
Target Start/End: Complemental strand, 37183301 - 37182655
Alignment:
| Q |
1 |
tctgccacaatatctacaacagttgggtatgctaaatctaaagtcaaacgctttctgaaatgctcagtggtagatggtttgttttaggattgcttgctgc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
37183301 |
tctgccacaatatctacaacagttgggtatgctaaatctaaagtcaaacgctttctgaaatgctcagtggtagatggtttgttttaggattgcttgttgc |
37183202 |
T |
|
| Q |
101 |
atttataacttttttcatttaagactatgttgtctcccaagtcatgcatgacttaaccaatcactcattgaatttggttacacatattatgcacggtgat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
37183201 |
atttataacttttttcatttaagactatgttgtctcccaagtcatgcatgacttaaccaattactcattgaatttggttacacgtattatgcacggtgat |
37183102 |
T |
|
| Q |
201 |
ttgaatttccatatgaatgtggctgagtgatgtttaaaaatgcttgcatgagataagtggtatatttatttaaaacaaattaacaatcatgttttatgag |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
37183101 |
ttgaatttccatatgaatgtggctgagtgatgtttaaaaatgcttgcatgagataagtggtatatttatttaaaacaaattaacaatcatgtttttggag |
37183002 |
T |
|
| Q |
301 |
tcccacgcttcctcttataaggtataagggaagattgaatttctgctgaacatagtaaaaacgccccaggtgagcattgagtcaggttcttgaagtagtt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
37183001 |
tcccacgcttcctcttataaggtataagggaagattgaatttctgctgaacatagtaaaaacaccccaggtgagcattgagtcaggttcttgaagtagtt |
37182902 |
T |
|
| Q |
401 |
gtgttgttatgctttgttgctcttgaagtagttgtgcttttaatcactatctggttggttgaacatctgttagaaaatttgtaggaaattgattattctc |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37182901 |
gtgttgttatgctttgttgctcttgaagtagttgtgcttttaatcaccatctggttggttgaacatctgttagaaaatttgtaggaaattgattattctc |
37182802 |
T |
|
| Q |
501 |
ttcctactatagatgctatatnnnnnnnnnnnntctgctgtttattccatagaacatgttgcttacttctgaataagaagtggaannnnnnnnaactcaa |
600 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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|
| T |
37182801 |
ttcctactatagatgctata----aaaaaaaaatctgctgtttattccatagaacatgttgcttacttctgaataagaagtgaaaattttcttaactcaa |
37182706 |
T |
|
| Q |
601 |
agtatagcatgatttattaattagtgtcatctatatgtttttggtccataa |
651 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37182705 |
agtatagcatgatttattaattagtgtcatctatatgtttttggtccataa |
37182655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 1 - 651
Target Start/End: Complemental strand, 37194433 - 37193787
Alignment:
| Q |
1 |
tctgccacaatatctacaacagttgggtatgctaaatctaaagtcaaacgctttctgaaatgctcagtggtagatggtttgttttaggattgcttgctgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
37194433 |
tctgccacaatatctacaacagttgggtatgctaaatctaaagtcaaacgctttctgaaatgctcagtggtagatggtttgttttaggattgcttgttgc |
37194334 |
T |
|
| Q |
101 |
atttataacttttttcatttaagactatgttgtctcccaagtcatgcatgacttaaccaatcactcattgaatttggttacacatattatgcacggtgat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
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|
| T |
37194333 |
atttataacttttttcatttaagactatgttgtctcccaagtcatgcatgacttaaccaattactcattgaatttggttacacgtattatgcacggtgat |
37194234 |
T |
|
| Q |
201 |
ttgaatttccatatgaatgtggctgagtgatgtttaaaaatgcttgcatgagataagtggtatatttatttaaaacaaattaacaatcatgttttatgag |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
37194233 |
ttgaatttccatatgaatgtggctgagtgatgtttaaaaatgcttgcatgagataagtggtatatttatttaaaacaaattaacaatcatgtttttggag |
37194134 |
T |
|
| Q |
301 |
tcccacgcttcctcttataaggtataagggaagattgaatttctgctgaacatagtaaaaacgccccaggtgagcattgagtcaggttcttgaagtagtt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37194133 |
tcccacgcttcctcttataaggtataagggaagattgaatttctgctgaacatagtaaaaacaccccaggtgagcattgagtcaggttcttgaagtagtt |
37194034 |
T |
|
| Q |
401 |
gtgttgttatgctttgttgctcttgaagtagttgtgcttttaatcactatctggttggttgaacatctgttagaaaatttgtaggaaattgattattctc |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37194033 |
gtgttgttatgctttgttgctcttgaagtagttgtgcttttaatcaccatctggttggttgaacatctgttagaaaatttgtaggaaattgattattctc |
37193934 |
T |
|
| Q |
501 |
ttcctactatagatgctatatnnnnnnnnnnnntctgctgtttattccatagaacatgttgcttacttctgaataagaagtggaannnnnnnnaactcaa |
600 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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|
| T |
37193933 |
ttcctactatagatgctata----aaaaaaaaatctgctgtttattccatagaacatgttgcttacttctgaataagaagtgaaaattttcttaactcaa |
37193838 |
T |
|
| Q |
601 |
agtatagcatgatttattaattagtgtcatctatatgtttttggtccataa |
651 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37193837 |
agtatagcatgatttattaattagtgtcatctatatgtttttggtccataa |
37193787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 10 - 87
Target Start/End: Complemental strand, 37202363 - 37202286
Alignment:
| Q |
10 |
atatctacaacagttgggtatgctaaatctaaagtcaaacgctttctgaaatgctcagtggtagatggtttgttttag |
87 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||| || |||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
37202363 |
atatctataacagttgggtatgccaaatctaaagttaagtgctttctgaaatgctcagtggttgatggtttgatttag |
37202286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 384 - 419
Target Start/End: Complemental strand, 37211338 - 37211303
Alignment:
| Q |
384 |
aggttcttgaagtagttgtgttgttatgctttgttg |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
37211338 |
aggttcttgaagtagttgtgttgttatgctttgttg |
37211303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 235 - 418
Target Start/End: Complemental strand, 37217086 - 37216909
Alignment:
| Q |
235 |
taaaaatgcttgcatgagataagtggtatatttatttaaaacaaattaacaatcatgttttatgagt---cccacgcttcctcttataaggtataaggga |
331 |
Q |
| |
|
|||||||| |||||||||| |||||||||||| || |||||||||| || |||||||| | |||| ||||| ||||| || | |||| | ||||| |
|
|
| T |
37217086 |
taaaaatgtctgcatgagatgagtggtatattttttaaaaacaaatttaccatcatgttattggagtactcccactcttccactaa--aggtgtgaggga |
37216989 |
T |
|
| Q |
332 |
agattgaatttctgctgaacatagtaaaaacgccccaggtgagcattgagtcaggttcttgaagtagttgtgttgttatgctttgtt |
418 |
Q |
| |
|
| ||| ||||||||| ||| | ||||||||| | |||||||||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
37216988 |
aaattaaatttctgcagaataaagtaaaaacacta---gtgagcattgag----gttcttgaagtagttgtgtttttatgctttgtt |
37216909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 456 - 520
Target Start/End: Complemental strand, 37201853 - 37201789
Alignment:
| Q |
456 |
tggttgaacatctgttagaaaatttgtaggaaattgattattctcttcctactatagatgctata |
520 |
Q |
| |
|
|||||| ||||||||| |||||| | | ||||||||||||||||||| ||| || |||||||||| |
|
|
| T |
37201853 |
tggttggacatctgtttgaaaatgtattggaaattgattattctcttgctagtagagatgctata |
37201789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 234 - 293
Target Start/End: Complemental strand, 37202053 - 37201993
Alignment:
| Q |
234 |
ttaaaaatgcttgcatgagataagtggtatattta-tttaaaacaaattaacaatcatgtt |
293 |
Q |
| |
|
||||||||| ||||||||||| |||| |||||||| ||||||| |||||||| |||||||| |
|
|
| T |
37202053 |
ttaaaaatgtttgcatgagatgagtgctatatttattttaaaataaattaaccatcatgtt |
37201993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 187 - 221
Target Start/End: Complemental strand, 37211495 - 37211461
Alignment:
| Q |
187 |
ttatgcacggtgatttgaatttccatatgaatgtg |
221 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |
|
|
| T |
37211495 |
ttatgcatggtgatttgaatttccatatgaatgtg |
37211461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 234 - 411
Target Start/End: Complemental strand, 7527198 - 7527026
Alignment:
| Q |
234 |
ttaaaaatgcttgcatgagataagtggtatatttatttaaaacaaattaacaatcatgttttatgagtcccacgcttcctcttataaggtataagggaag |
333 |
Q |
| |
|
|||| |||| ||||||||| | |||||||||||||||||||||||||||| || ||||| || |||| ||| ||||||| | |||||| | ||||| |
|
|
| T |
7527198 |
ttaataatgtttgcatgaggtgtgtggtatatttatttaaaacaaattaaccatgatgttataggagtatcactcttcctcctctaaggtgtgtgggaaa |
7527099 |
T |
|
| Q |
334 |
attgaatttctgctgaacatagtaaaaacgccccaggtgagcattgagtcaggttcttgaagtagttgtgttgttatg |
411 |
Q |
| |
|
||| ||||||||| ||||| ||||||||| | | | |||||||||| ||||||||||||||||| |||| ||||| |
|
|
| T |
7527098 |
attaaatttctgcagaacaaagtaaaaacactcta-gtgagcattg----aggttcttgaagtagttatgttcttatg |
7527026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 234 - 314
Target Start/End: Original strand, 414835 - 414914
Alignment:
| Q |
234 |
ttaaaaatgcttgcatgagataagtggtatatttatttaaaacaaattaacaatcatgttttatgagtcccacgcttcctc |
314 |
Q |
| |
|
||||||||| ||||||||||| | |||||||||||||| |||||||||||| || |||| || ||||||||| ||||||| |
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|
| T |
414835 |
ttaaaaatgtttgcatgagatgattggtatatttattt-aaacaaattaaccattgtgttataggagtcccactcttcctc |
414914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 534 - 651
Target Start/End: Original strand, 415114 - 415235
Alignment:
| Q |
534 |
tctgctgtttattccatagaacatgttgcttacttctgaataagaagtggaannnnnnnnaactcaaagtatagcatgatttattaatta----gtgtca |
629 |
Q |
| |
|
||||||||||||| ||||||||| ||||||| |||||||||||| |||||| |||||||| || | |||||||||||| ||| |||| | |
|
|
| T |
415114 |
tctgctgtttattgaatagaacatattgcttaattctgaataagatgtggaaataatcttaactcaaaataaatcatgatttattagttagagggtgtta |
415213 |
T |
|
| Q |
630 |
tctatatgtttttggtccataa |
651 |
Q |
| |
|
||||||| |||||||| ||||| |
|
|
| T |
415214 |
tctatatctttttggttcataa |
415235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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