View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18565_high_51 (Length: 220)
Name: NF18565_high_51
Description: NF18565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18565_high_51 |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 6e-95; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 9 - 204
Target Start/End: Complemental strand, 12941891 - 12941696
Alignment:
| Q |
9 |
gaagaatatataaaagaaaaacctggtaatttctttgggtttggttcgtttttggcacgagtaatagtaacattgaatataactggtcttcgtccaatca |
108 |
Q |
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| T |
12941891 |
gaagaaaatataaaagaaatacctggtaatttctttgggtttggttcgtttttggcacaagtaatagtaacattgaatgaaactggtcttcgtccaatca |
12941792 |
T |
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| Q |
109 |
tctcaaatttacaaacatcatcaactttcaaattatatttttgtctgaataatttccatccaccacttataccatgttttttcttggtaccataat |
204 |
Q |
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| T |
12941791 |
tctcaaatttacaaacatcatcaactttcaaattatatttttgtctgaataatttccatccaccacttataccatgttttttcttggtaccataat |
12941696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 26 - 204
Target Start/End: Original strand, 12915628 - 12915806
Alignment:
| Q |
26 |
aaaacctggtaatttctttgggtttggttcgtttttggcacgagtaatagtaacattgaatataactggtcttcgtccaatcatctcaaatttacaaaca |
125 |
Q |
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| T |
12915628 |
aaaacctagtgatttctttgggcttggtttgtttatggcacgagtaatagtaacaatgaatgaacttggtcgcccttgaatcatctcaaatttacaaaca |
12915727 |
T |
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| Q |
126 |
tcatcaactttcaaattatatttttgtctgaataatttccatccaccacttataccatgttttttcttggtaccataat |
204 |
Q |
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| T |
12915728 |
tcatcaacttgcaaattatatttttgtctgaataatttccatccaccacccataccatattttttctgggtaccataat |
12915806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 21 - 174
Target Start/End: Original strand, 12922701 - 12922854
Alignment:
| Q |
21 |
aaagaaaaacctggtaatttctttgggtttggttcgtttttggcacgagtaatagtaacattgaatataactggtcttcgtccaatcatctcaaatttac |
120 |
Q |
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| T |
12922701 |
aaagaaaaacctggtaatttcgtaaggcttggtccgtttctggcacgagtaatagtaacggtgaatgaaaaaggtctccgttgaatcatctcaaatttac |
12922800 |
T |
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| Q |
121 |
aaacatcatcaactttcaaattatatttttgtctgaataatttccatccaccac |
174 |
Q |
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| T |
12922801 |
aaacatcatcaacttgcaaattatatttttccctaaatattttccaaccaccac |
12922854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 26 - 174
Target Start/End: Complemental strand, 12949912 - 12949764
Alignment:
| Q |
26 |
aaaacctggtaatttctttgggtttggttcgtttttggcacgagtaatagtaacattgaatataactggtcttcgtccaatcatctcaaatttacaaaca |
125 |
Q |
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| T |
12949912 |
aaaacctagtagtttctttgggattgcttcgtttccggcacgagtaatagtgacaatgaatgaaaaaggtctccgtcgaatcatctcaaatttacaaaca |
12949813 |
T |
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| Q |
126 |
tcatcaactttcaaattatatttttgtctgaataatttccatccaccac |
174 |
Q |
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| T |
12949812 |
tcgtcaacttgcaaattatatttttccctgaatattttccaaccaccac |
12949764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 26 - 174
Target Start/End: Complemental strand, 12955551 - 12955403
Alignment:
| Q |
26 |
aaaacctggtaatttctttgggtttggttcgtttttggcacgagtaatagtaacattgaatataactggtcttcgtccaatcatctcaaatttacaaaca |
125 |
Q |
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| T |
12955551 |
aaaacctagtaatttctttgggattggttcctttccagcacgagtaatagtaacagtgaataaaaacggtctccgttgaatcatctcaaatttacaaaca |
12955452 |
T |
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| Q |
126 |
tcatcaactttcaaattatatttttgtctgaataatttccatccaccac |
174 |
Q |
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| T |
12955451 |
tcgtcaacttgcaaattatacttttccctgaatattttccaaccaccac |
12955403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 61 - 174
Target Start/End: Original strand, 12886246 - 12886359
Alignment:
| Q |
61 |
tggcacgagtaatagtaacattgaatataactggtcttcgtccaatcatctcaaatttacaaacatcatcaactttcaaattatatttttgtctgaataa |
160 |
Q |
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||||||||||||||||||| ||||| || ||||| ||| |||||||||||||||||||||||| ||||||| |||||||||||||| || |||| |
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| T |
12886246 |
tggcacgagtaatagtaacggtgaatgaaaaaggtctccgttgaatcatctcaaatttacaaacatcgtcaacttgcaaattatatttttccctaaatat |
12886345 |
T |
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| Q |
161 |
tttccatccaccac |
174 |
Q |
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| T |
12886346 |
tttccaaccaccac |
12886359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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